BAC Information

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BAC

Clone NameMSMg01-535H07
Chromosome11 (Build37)
Map Location 89,858,094 - 90,003,932
singlet/doubletdoublet
Overlap genePctp, Tmem100
Upstream geneTrim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535H07.T7 (MSMg01no535_h07.b1)MSMg01-535H07.TJ (MSMg01no535_h07.g1)
ACCAG602901AG602902
length773772
length of high quality
(start - end)		673 (48 - 720)694 (74 - 767)
definitionCHROMAT_FILE: MSMg01no535_h07.b1 PHD_FILE: MSMg01no535_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:17 2005CHROMAT_FILE: MSMg01no535_h07.g1 PHD_FILE: MSMg01no535_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,858,094 - 89,858,762)(90,003,239 - 90,003,932)
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAGAGAGCATGAACACCTCTGAGGGAGGACCACTGGTATACTG
CTCTGCATGGTAGCCCAGCCCAGTAGCTATGGATAGAGACTGTGGTAATT
TTTATTAAGACCGGTCAGTTTTGAGAACATCACAGACCAAGGTTGTAAGG
GGTCTGCATGCCTTACAACATGCTTTCTCCACCGATTTGAAGAACTGAGC
CTACATTGTTTGTTCAGTCAAGAGTGTGGTCACGTGAGTCAAGTGGGCCC
CGCCCTTCTCCCAAAGGAGAAGGCCTTTAGAGTGAGCATTAAATTGATGG
TTAATGTTTAACTTGGAAGAGGCACAAAGAACTACGCATGTCCTTCCATT
AAGTAACTCACGGAAAACTCAAAAGCTGGAAAGGATCTAGGCTCTTGCCT
CTGAGAAGCAATCGGGCATAGGCCTCTCACCATGTGCTTCCCTTGGTGAC
CCATCAGTGGTCACTGTGATAGCCACACGCTTTGTTTGGAGGAGGTTTTT
CCGATCACTTGGGCATGCTATGATTCTTTCAATAATATCAGGGACGGTCT
TGTCAATTTCGTTTCCAAGCAATTTTCCAGTCATGAGCTTATTGACTCAT
CTGTGTGGTCCTTGANGTAGACAGGGACATTGCTGTGATCTCCATCCTTA
TATGAAGCAATGAAACTCGGAGATACTGAATGACTTCCCTCAGTCTGACT
TANGGAACAGTACCAGGTCAAAC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGCATCACCAAATGACTGTCCTTTCT
GAAGCCTGGCAGGAGCCCTGTGACTCTGTGCCAGCTGGAAAGGGGAGGAG
GCAGGTCTCTAAGAAGAAAGCGAGACCTTGCTTCCAGTAGAGAGGTCCTT
GGATCTGAAGGAATGGGCTAAATGTTATTTATCCTTGTCTCCTTTCCGGT
GGGAACAGCAGGAGGGGCAATCGCAAGGCAGAGACGCTTCTGAGATGAAC
AACTGATGCTTCAAAAGCAGAGGGCTGGCTGCTCTGCAGTCTTGCCCCAC
ATCAGCTGGAGACAGGGTCTAGGCATAGAGTCCTCCGGCTTTACTCCCTA
AATCCAAATAACTGTTAGCTTCCAAAATGCTGGATCCAACTGGATGGAAC
ACGATCTCTCCCTTCCTTTAATCGCTCTGGATCCTGGCACTGCAATATTG
GTTTGAGTTTAGACTGTGTGTATAGAAGGGTCTTATGTGATCTGAGTGCC
GTGGTGTCTGCTGAAAGTGTTGAAGACATGACAGGTGGAGAAAGGGGCAT
GTCCTGATTTCAAAATGGCTTGGCTTAGATTTAGCAAGGTGCTCAGATAA
CCACAAACTAATTCTGAAGGTATGTGGTACAAAGTAACCTACATACCTAA
TTCATATGAGAAAAACAATTTTGCTCTCTGTCTCTCTGCCTCTGTCTCTC
TCTGTCTCTCTTTCTGTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_h07.b1 MSMg01no535_h07.b1 CHROMAT_FILE:
MSMg01no535_h07.b1 PHD_FILE: MSMg01no535_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:17 2005
         (673 letters)



>mm_chr11_89857890_89858962
          Length = 1073

 Score = 1280 bits (662), Expect = 0.0
 Identities = 667/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagagcatgaacacctctgagggaggaccactggtatactgctctgcatggt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagagcaggaacacctctgagggaggaccactggtatactgctctgcatggt 264

                                                                       
Query: 65  agcccagcccagtagctatggatagagactgtggtaatttttattaagaccggtcagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcccagcccagtagctatggatagagactgtggtaatttttattaagaccggtcagttt 324

                                                                       
Query: 125 tgagaacatcacagaccaaggttgtaaggggtctgcatgccttacaacatgctttctcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagaacatcacagaccaaggttgtaaggggtctgcatgccttacaacatgctttctcca 384

                                                                       
Query: 185 ccgatttgaagaactgagcctacattgtttgttcagtcaagagtgtggtcacgtgagtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccgatttgaagaactgagcctacattgtttgttcagtcaagagtgtggtcacgtgagtca 444

                                                                       
Query: 245 agtgggccccgcccttctcccaaaggagaaggcctttagagtgagcattaaattgatggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgggccccgcccttctcccaaaggagaaggcctttagagtgagcattaaattgatggt 504

                                                                       
Query: 305 taatgtttaacttggaagaggcacaaagaactacgcatgtccttccattaagtaactcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatgtttaacttggaagaggcacaaagaactacgcatgtccttccattaagtaactcac 564

                                                                       
Query: 365 ggaaaactcaaaagctggaaaggatctaggctcttgcctctgagaagcaatcgggcatag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaaaactcaaaagctggaaaggatctaggctcttgcctctgagaagcaatcgggcatag 624

                                                                       
Query: 425 gcctctcaccatgtgcttcccttggtgacccatcagtggtcactgtgatagccacacgct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctctcaccatgtgcttcccttggtgacccatcagtggtcactgtgatagccacacgct 684

                                                                       
Query: 485 ttgtttggaggaggtttttccgatcacttgggcatgctatgattctttcaataatatcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttgtttggaggaggtttttccgatcacttgggcatgctatgattctttcaataatatcag 744

                                                                       
Query: 545 ggacggtcttgtcaatttcgtttccaagcaattttccagtcatgagcttattgactcatc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggacggtcttgtcaatttcgtttccaagcaattttccagtcatgagcttattgactcatc 804

                                                                       
Query: 605 tgtgtggtccttgangtagacagggacattgctgtgatctccatccttatatgaagcaat 664
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgtgtggtccttgaggtagacagggacattgctgtgatctccatccttatatgaagcaat 864

                    
Query: 665 gaaactcgg 673
           |||||||||
Sbjct: 865 gaaactcgg 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_h07.g1 MSMg01no535_h07.g1 CHROMAT_FILE:
MSMg01no535_h07.g1 PHD_FILE: MSMg01no535_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:17 2005
         (694 letters)



>mm_chr11_90003083_90004176
          Length = 1094

 Score = 1342 bits (694), Expect = 0.0
 Identities = 694/694 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcatcaccaaatgactgtcctttctgaagcctggcaggagccctgtgactctgtgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ttgcatcaccaaatgactgtcctttctgaagcctggcaggagccctgtgactctgtgcca 791

                                                                       
Query: 61  gctggaaaggggaggaggcaggtctctaagaagaaagcgagaccttgcttccagtagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gctggaaaggggaggaggcaggtctctaagaagaaagcgagaccttgcttccagtagaga 731

                                                                       
Query: 121 ggtccttggatctgaaggaatgggctaaatgttatttatccttgtctcctttccggtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggtccttggatctgaaggaatgggctaaatgttatttatccttgtctcctttccggtggg 671

                                                                       
Query: 181 aacagcaggaggggcaatcgcaaggcagagacgcttctgagatgaacaactgatgcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aacagcaggaggggcaatcgcaaggcagagacgcttctgagatgaacaactgatgcttca 611

                                                                       
Query: 241 aaagcagagggctggctgctctgcagtcttgccccacatcagctggagacagggtctagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aaagcagagggctggctgctctgcagtcttgccccacatcagctggagacagggtctagg 551

                                                                       
Query: 301 catagagtcctccggctttactccctaaatccaaataactgttagcttccaaaatgctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 catagagtcctccggctttactccctaaatccaaataactgttagcttccaaaatgctgg 491

                                                                       
Query: 361 atccaactggatggaacacgatctctcccttcctttaatcgctctggatcctggcactgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atccaactggatggaacacgatctctcccttcctttaatcgctctggatcctggcactgc 431

                                                                       
Query: 421 aatattggtttgagtttagactgtgtgtatagaagggtcttatgtgatctgagtgccgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aatattggtttgagtttagactgtgtgtatagaagggtcttatgtgatctgagtgccgtg 371

                                                                       
Query: 481 gtgtctgctgaaagtgttgaagacatgacaggtggagaaaggggcatgtcctgatttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgtctgctgaaagtgttgaagacatgacaggtggagaaaggggcatgtcctgatttcaa 311

                                                                       
Query: 541 aatggcttggcttagatttagcaaggtgctcagataaccacaaactaattctgaaggtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aatggcttggcttagatttagcaaggtgctcagataaccacaaactaattctgaaggtat 251

                                                                       
Query: 601 gtggtacaaagtaacctacatacctaattcatatgagaaaaacaattttgctctctgtct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtggtacaaagtaacctacatacctaattcatatgagaaaaacaattttgctctctgtct 191

                                             
Query: 661 ctctgcctctgtctctctctgtctctctttctgt 694
           ||||||||||||||||||||||||||||||||||
Sbjct: 190 ctctgcctctgtctctctctgtctctctttctgt 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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