Query= MSMg01no536_g06.b1 MSMg01no536_g06.b1 CHROMAT_FILE:
MSMg01no536_g06.b1 PHD_FILE: MSMg01no536_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:29 2005
(246 letters)
>mm_chr11_62189742_62190386
Length = 645
Score = 437 bits (226), Expect = e-127
Identities = 241/246 (97%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 1 aatacttttttgtattaacaaatactgtgtacttaaaaactgatcaaatgaataaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacttttttgtattaacaaatactgtgtacttaaaaactgatcaaatgaataaataca 260
Query: 61 ttgtttttaaacctaggccatgaaagcacaaatatactatttcctccagtgaagaaattc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttgtttttaaacctaggccatgaaagcacaaatatactatttcctc-agtgaagaaattc 319
Query: 121 ctacataatcaacaactaagctaaaatttcatatttgagggaacagaagtacacacaatt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctacataatcaacaactaaactaaaatttcatatttgagggaacagaagtacacacaatt 379
Query: 181 tatgattctgaaataccttcactgtcttctggattttcctcctcatttgaggcttcaatg 240
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 taggattctgaaataccttcactatcttctggattttcctcctcatttgaggcttcaata 439
Query: 241 tcttca 246
||||||
Sbjct: 440 tcttca 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space: 150732
Effective search space used: 150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no536_g06.g1 MSMg01no536_g06.g1 CHROMAT_FILE:
MSMg01no536_g06.g1 PHD_FILE: MSMg01no536_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:29 2005
(531 letters)
>mm_chr11_62385340_62386270
Length = 931
Score = 944 bits (488), Expect = 0.0
Identities = 521/532 (97%), Gaps = 2/532 (0%)
Strand = Plus / Minus
Query: 1 caggccagccagagctacatagtgagacttcaaaacaacaacaataacaacaacatgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 caggccagccagagctacatagtgagacttcaaaacaacaacaataacaacaacatgtat 773
Query: 61 taagcactcattgtgtctgataccatgctaagtgctccggt-tatgacccttagagcaag 119
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 772 taagcactcattgtgtctgataccatgctaagtgctcc-gtgtatgacccttagagcaag 714
Query: 120 cttatttcacagatgatgaggctgaaggtaggcaagtgtagaccacatgggtaggaagtg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 713 cttatttcacagatgatgaggctgaaggtaggcaagtgtagaccacatgggtgggaagtg 654
Query: 180 gggaagaaaatatttaaacccagagccacaccctggacacttgtgctttccaggggatga 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 653 aggaagaaaagatttaaacccagagccacaccctggacacttgtgctttccaggagatga 594
Query: 240 gcatgcacttttgacatacccacagcttccaaggccgcttattaaccatgaaatagtcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gcatgcacttttgacatacccacagcttccaaggccgcttattaaccatgaaatagtcag 534
Query: 300 cacagctttaaatgtcaggtagggcagagggcatcactgttctcctgaagtaaaactgga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cacagctttaaatgtcaggtagggcagagggcatcactgttctcctgaagtaaaactgga 474
Query: 360 gaccatcaagggacaatgaaaagtgagcttttattggctaaagagatggcttagcagcta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaccatcaagggacaatgaaaagtgagcttttattggctaaagagatggcttagcagcta 414
Query: 420 ataatgggcactgcgcttgcaaccccaagacatgggcacttcacaattgcccgtaactct 479
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 413 agaatgggaactgcgcttgcaaccccaagacatgggcacttcacaattgcctgtaactct 354
Query: 480 gacctgattccttcttctggattccatgcactctaacatgcactgattcaaa 531
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 353 cacctgattccttcttctggattctatgcactctaacatgcactgattcaaa 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
