BAC Information

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BAC

Clone NameMSMg01-536K09
Chromosome11 (Build37)
Map Location 7,070,455 - 7,071,084
singlet/doubletsinglet
Overlap geneAdcy1
Upstream geneNudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332
Downstream geneLOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536K09.T7 (MSMg01no536_k09.b1)MSMg01-536K09.TJ (MSMg01no536_k09.g1)
ACCAG603811AG603812
length736737
length of high quality
(start - end)
534 (48 - 581)630 (102 - 731)
definitionCHROMAT_FILE: MSMg01no536_k09.b1 PHD_FILE: MSMg01no536_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:49 2005CHROMAT_FILE: MSMg01no536_k09.g1 PHD_FILE: MSMg01no536_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGAGGAATACTGAATGGCTGAGAAGCACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTAACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGGAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATCAAAAAGAATGAATTTATGAAATTCCTAGGCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATATGTACTCACCGATAATTGGATATTACCCCACATC
TACGATACCAAGATATAAGATACAATTTCCTAAACACATGAAACTCTTTA
CAAATGAAGACTGATTTGCGGATACTATGCCCCTCC
CCCACCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGGAGGCCCTACAGCCCCAC
TTCTGATCTCCTGGCCCGTACATTCTCTTCCAACCCCTCCTGGCTGCTGG
CTTCTGACTGCTGCGACAGTGGGCCCTTCTCTTCCTGTGCCATGGCTGCA
CATTCAGAGAGGAGGGGTGTGTGCTGTCTTCTCTGTGGTGTCTTGGACGC
TGTAAGTCTAACAAGAATCAAGCCTTCGTTTATGCTAAGAGCGATTGACC
CACTATACCCACGAGTGCTCTCCTTGCTGGAAGACATCCTCTCCTTGGCC
TAACCAGCTCTCCTCTTGGTGGTTTCAGAGTCGGCACAGTGTGCATTCCT
GAGTCTAGGTGTGGTGTCCCTGCTCCAGGGTGATGGGAAAGAGTGGCCCT
GTTGACTGACACCTGGGGCCTCCCACCTGTGTGTCCCAGTAACTGCAACT
GTGAGGAAATCCCGTTAGGGTACAGGATTCTGGAGGAGTTGGTAGGAAGC
AACTGGCTGGAAATAGCGGGATGAAGCCTGGCTTTTGAAGATACTCAGTT
TCAATACAGGAAGGGAGGCAGCTTGAAGCAGGGCAAGTGGGCATAAGCCC
TGCCTGATCTTGTCTATGGAGGCCCATTTCCTCACGGCTCCCCAAGAGCT
TGCCCCCTTCCAAGGGCCCTATCTTCTTAGAATAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_k09.g1 MSMg01no536_k09.g1 CHROMAT_FILE:
MSMg01no536_k09.g1 PHD_FILE: MSMg01no536_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:49 2005
         (630 letters)



>mm_chr11_7070255_7071284
          Length = 1030

 Score = 1180 bits (610), Expect = 0.0
 Identities = 625/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatctcctggcccgtacattctcttccaacccctcctggctgctggcttctgactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatctcctggcccgtacattctcttccaacccctcctggctgctggcttctgactgc 260

                                                                       
Query: 61  tgcgacagtgggcccttctcttcctgtgccatggctgcacattcagagaggaggggtgtg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcgacagtgggccctcctcttcctgtgccatggctgcacattcagagaggaggggtgtg 320

                                                                       
Query: 121 tgctgtcttctctgtggtgtcttggacgctgtaagtctaacaagaatcaagccttcgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgtcttctctgtggtgtcttggacgctgtaagtctaacaagaatcaagccttcgttt 380

                                                                       
Query: 181 atgctaagagcgattgacccactatacccacgagtgctctccttgctggaagacatcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctaagagcgattgacccactatacccacgagtgctctccttgctggaagacatcctc 440

                                                                       
Query: 241 tccttggcctaaccagctctcctcttggtggtttcagagtcggcacagtgtgcattcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttggcctaaccagctctcctcttggtggtttcagagtcggcacagtgtgcattcctg 500

                                                                       
Query: 301 agtctaggtgtggtgtccctgctccagggtgatgggaaagagtggccctgttgactgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctaggtgtggtgtccctgctccagggtgatgggaaagagtggccctgttgactgaca 560

                                                                       
Query: 361 cctggggcctcccacctgtgtgtcccagtaactgcaactgtgaggaaatcccgttagggt 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgggacctcccacctgtgtgtcccagtaactgcaactgtgaggaaatcccgttagggt 620

                                                                       
Query: 421 acaggattctggaggagttggtaggaagcaactggctggaaatagcgggatgaagcctgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaggattctggaggagttggtaggaagcaactggctggaaatagcgggatgaagcctgg 680

                                                                       
Query: 481 cttttgaagatactcagtttcaatacaggaagggaggcagcttgaagcagggcaagtggg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 cttttgaagatactcagtttcaatacaggaagggaggcagcttgaagcagggcaggtggg 740

                                                                       
Query: 541 cataagccctgcctgatcttgtctatggaggcccatttcctcacggctccccaagagctt 600
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 cataagccctgcctgatcttgtctgtggaggcccatttcctcacggctccccaagagctt 800

                                         
Query: 601 gcccccttccaagggccctatcttcttaga 630
           ||||||||||||||| ||||||||||||||
Sbjct: 801 gcccccttccaagggtcctatcttcttaga 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)