BAC Information

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BAC

Clone NameMSMg01-538J20
Chromosome11 (Build37)
Map Location 59,402,553 - 59,566,807
singlet/doubletdoublet
Overlap geneOlfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749
Upstream geneOlfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157
Downstream gene4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538J20.T7 (MSMg01no538_j20.b1)MSMg01-538J20.TJ (MSMg01no538_j20.g1)
ACCAG605301AG605302
length717721
length of high quality
(start - end)		560 (41 - 600)555 (76 - 630)
definitionCHROMAT_FILE: MSMg01no538_j20.b1 PHD_FILE: MSMg01no538_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:18 2005CHROMAT_FILE: MSMg01no538_j20.g1 PHD_FILE: MSMg01no538_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,566,252 - 59,566,807)(59,402,553 - 59,403,107)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGTTGACATAAATATATGTGCAGATATAATTGGATATATTTGATGAGA
ATCCTATGCTATAACACAAGAGCTAGCTTATATGGTTCTATACAAGATGT
TAGAATGCCTCCATCTAATGCCTGCTCAACCGGATCTCACCATAGCCCCA
GGCCACATCCCTATTTTACCATAGTACAAAGAATATGTGCTTTTATTGAA
CAGTTTTTTACATGCAGGGAGGGAGCTGCCCCACATTACCTCCTTCTCTA
GCAGAGAGGTGAGCTCATGTGTGGAGAGCCGCTCACTTCTGTCCTCCAAG
GATAGGTGCAGAGGGGCAATGGGCACCTGTTTCTCCTCCCTGAGAGGGGT
GGTCTCCACTTGATGCCAACGCTGCTCAATTTCCACGTGGACATTCTGTG
TCTTGAGGTCAGGGGTTCCCAGCAGCCCTGGGCTCCGGTCGATGTCCATA
CGTAGGGCTGTGTCCTCCATTCCTGGTCCATCAATGGTGTCCAGCATCCC
AAAGCGCTTGCGGCGTTCTTCTCGACGTCGAGCTCGTTCACGCTCCAGCT
CACCTGGCTCGGCTTCAAGACACCCAGGGTCACCAGAATCAGAAGACCCA
ACAGCGCTGGTCCTTTCTTGAGCCAGGGCCTGTTGGATAGGGCGGAATTC
AGCCCAGTCTAAGGTCC

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAGGTCTTACGTTTTTGGAAAAG
CAAACCTGCCAGCACTAACTTACATATGGTAGCTGGAGAAACCAGACAGA
GATCACTGGCCTTTCAAAGATATCCCCTTACTCTGGGATGTTAGGACCTT
CTTCCAAGCTTCCTTCACATCCTTGTTTCTCAGAGTGTAGATGAGTGGGT
TGAGGAGCGGGGTGAAGACACAGTAGAAGAGGGACAGGAACTCGGACTGA
GTGTTGTTGCCTGGTGGCTGGAGGTACGTGTACATACCAGGTCCAAAGTA
CATGGTGACCACGAGCAAGTGAGAAGTGCATGTGCTCAAAGCCTTGCGCC
TTCCCTCAGCTGAGGGTAACTTCAGCACAGCCCTAGCAATGAAGATGTAA
GAGATGAGCACTGTCAAAGGAGACACTATTCCAAAAGGAATAGCTCCCAA
GGCTAGGGACAGGTCGTTTGTGGTGGTGTCACTACATGCCAGTTTAATCA
AAGCAGGCACCTCACAGAAGAAGTGGTCCAGTGTGTTTTTCGCACAAAGG
GTAAGGTAGAGGGTGAGTGTAGCTTGAACCAGAGAATTGGCCAGGCCACT
GGCCCAGCATACAGCTGCCAGCCACACGCATGCCCAGAGATGCATGATGA
GCACATATCAGAGGGGACAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_j20.b1 MSMg01no538_j20.b1 CHROMAT_FILE:
MSMg01no538_j20.b1 PHD_FILE: MSMg01no538_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:18 2005
         (560 letters)



>mm_chr11_59566048_59567007
          Length = 960

 Score = 1067 bits (552), Expect = 0.0
 Identities = 555/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgttgacataaatatatgtgcagatataattggatatatttgatgagaatcc 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 760 gaattcactgttgacataaatatatgtgcagatataattggacatatttgatgagaatcc 701

                                                                       
Query: 65  tatgctataacacaagagctagcttatatggttctatacaagatgttagaatgcctccat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tatgctataacacaagagctagcttatatggttctatacaagatgttagaatgcctccat 641

                                                                       
Query: 125 ctaatgcctgctcaaccggatctcaccatagccccaggccacatccctattttaccatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctaatgcctgctcaaccggatctcaccatagccccaggccacatccctattttaccatag 581

                                                                       
Query: 185 tacaaagaatatgtgcttttattgaacagttttttacatgcagggagggagctgccccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tacaaagaatatgtgcttttattgaacagttttttacatgcagggagggagctgccccac 521

                                                                       
Query: 245 attacctccttctctagcagagaggtgagctcatgtgtggagagccgctcacttctgtcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attacctccttctctagcagagaggtgagctcatgtgtggagagccgctcacttctgtcc 461

                                                                       
Query: 305 tccaaggataggtgcagaggggcaatgggcacctgtttctcctccctgagaggggtggtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tccaaggataggtgcagaggggcaatgggcacctgtttctcctccctgagaggggtggtc 401

                                                                       
Query: 365 tccacttgatgccaacgctgctcaatttccacgtggacattctgtgtcttgaggtcaggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tccacttgatgccaacgctgctcaatttccacgtggacattctgtgtcttgaggtcaggg 341

                                                                       
Query: 425 gttcccagcagccctgggctccggtcgatgtccatacgtagggctgtgtcctccattcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gttcccagcagccctgggctccggtcgatgtccatacgtagggctgtgtcctccattcct 281

                                                                       
Query: 485 ggtccatcaatggtgtccagcatcccaaagcgcttgcggcgttcttctcgacgtcgagct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggtccatcaatggtgtccagcatcccaaagcgcttgcggcgttcttctcgacgtcgagct 221

                           
Query: 545 cgttcacgctccagct 560
           ||||||||||||||||
Sbjct: 220 cgttcacgctccagct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no538_j20.g1 MSMg01no538_j20.g1 CHROMAT_FILE:
MSMg01no538_j20.g1 PHD_FILE: MSMg01no538_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:18 2005
         (555 letters)



>mm_chr11_59402353_59403307
          Length = 955

 Score = 1073 bits (555), Expect = 0.0
 Identities = 555/555 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaggtcttacgtttttggaaaagcaaacctgccagcactaacttacatatggtagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaggtcttacgtttttggaaaagcaaacctgccagcactaacttacatatggtagctg 260

                                                                       
Query: 61  gagaaaccagacagagatcactggcctttcaaagatatccccttactctgggatgttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaaccagacagagatcactggcctttcaaagatatccccttactctgggatgttagg 320

                                                                       
Query: 121 accttcttccaagcttccttcacatccttgtttctcagagtgtagatgagtgggttgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttcttccaagcttccttcacatccttgtttctcagagtgtagatgagtgggttgagg 380

                                                                       
Query: 181 agcggggtgaagacacagtagaagagggacaggaactcggactgagtgttgttgcctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcggggtgaagacacagtagaagagggacaggaactcggactgagtgttgttgcctggt 440

                                                                       
Query: 241 ggctggaggtacgtgtacataccaggtccaaagtacatggtgaccacgagcaagtgagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctggaggtacgtgtacataccaggtccaaagtacatggtgaccacgagcaagtgagaa 500

                                                                       
Query: 301 gtgcatgtgctcaaagccttgcgccttccctcagctgagggtaacttcagcacagcccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcatgtgctcaaagccttgcgccttccctcagctgagggtaacttcagcacagcccta 560

                                                                       
Query: 361 gcaatgaagatgtaagagatgagcactgtcaaaggagacactattccaaaaggaatagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatgaagatgtaagagatgagcactgtcaaaggagacactattccaaaaggaatagct 620

                                                                       
Query: 421 cccaaggctagggacaggtcgtttgtggtggtgtcactacatgccagtttaatcaaagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccaaggctagggacaggtcgtttgtggtggtgtcactacatgccagtttaatcaaagca 680

                                                                       
Query: 481 ggcacctcacagaagaagtggtccagtgtgtttttcgcacaaagggtaaggtagagggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcacctcacagaagaagtggtccagtgtgtttttcgcacaaagggtaaggtagagggtg 740

                          
Query: 541 agtgtagcttgaacc 555
           |||||||||||||||
Sbjct: 741 agtgtagcttgaacc 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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