Query= MSMg01no538_k04.b1 MSMg01no538_k04.b1 CHROMAT_FILE:
MSMg01no538_k04.b1 PHD_FILE: MSMg01no538_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:20 2005
(669 letters)
>mm_chr11_41155636_41156704
Length = 1069
Score = 1259 bits (651), Expect = 0.0
Identities = 654/655 (99%)
Strand = Plus / Minus
Query: 15 ttagtgacatcggtagtgataagataaaatttaatcgcatgaataaatttctaaaactca 74
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1069 ttagtgacatcggtagtgataagataaattttaatcgcatgaataaatttctaaaactca 1010
Query: 75 acagaaaatttagaggaaaaaaattatctggtgatgatttgaaacttaagctatgtataa 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 acagaaaatttagaggaaaaaaattatctggtgatgatttgaaacttaagctatgtataa 950
Query: 135 tattttggaattatatttgggtagttgacattataatatataattagtatctaatataat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 tattttggaattatatttgggtagttgacattataatatataattagtatctaatataat 890
Query: 195 attaataattgtatatttaagctatggatgggtcttttggaaagtacatgtgtggctaaa 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 attaataattgtatatttaagctatggatgggtcttttggaaagtacatgtgtggctaaa 830
Query: 255 caattaggaatacataagatttcaataagtcatttgttatagattagaatatgacacgat 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 caattaggaatacataagatttcaataagtcatttgttatagattagaatatgacacgat 770
Query: 315 tgattaatgtctgatcaaatatcttctgcattttgtatcagaaggaaatctgacttatat 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgattaatgtctgatcaaatatcttctgcattttgtatcagaaggaaatctgacttatat 710
Query: 375 gcactctaccactaatcacagtcttattctatatctactgcataataaacttaagatggt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gcactctaccactaatcacagtcttattctatatctactgcataataaacttaagatggt 650
Query: 435 ttctaagtcttttataaaacagttaactctcttaatgtgttctacaaaaaaagaaaagat 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttctaagtcttttataaaacagttaactctcttaatgtgttctacaaaaaaagaaaagat 590
Query: 495 atcttaggtatatgccacatatattaaaagaaattaatattatagatattgttaagtcac 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atcttaggtatatgccacatatattaaaagaaattaatattatagatattgttaagtcac 530
Query: 555 attaagatattctaaaacatataaggctctacaggtcaaatacagattacttccttaata 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 attaagatattctaaaacatataaggctctacaggtcaaatacagattacttccttaata 470
Query: 615 gtgcaaaataactggtcaaagcacatggttcctttattcatagtgatttgaggcc 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtgcaaaataactggtcaaagcacatggttcctttattcatagtgatttgaggcc 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_k04.g1 MSMg01no538_k04.g1 CHROMAT_FILE:
MSMg01no538_k04.g1 PHD_FILE: MSMg01no538_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:20 2005
(637 letters)
>mm_chr11_41074253_41075290
Length = 1038
Score = 1218 bits (630), Expect = 0.0
Identities = 636/638 (99%), Gaps = 1/638 (0%)
Strand = Plus / Plus
Query: 1 ttttagtacatagtactatagggaaagacaacacatagaaaaggaagcctggctaagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttagtacatagtactatagggaaagacaacacatagaaaaggaagcctggctaagata 260
Query: 61 caaaaccagcaacagtttgcttcgctgccattttgcaaactaccaaatcttttcaataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaaccagcaacagtttgcttcgctgccattttgcaaactaccaaatcttttcaataga 320
Query: 121 cagaaaagtacagatgggagtgaatcttttatactatctacactaagtaaatggtgattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaaagtacagatgggagtgaatcttttatactatctacactaagtaaatggtgattt 380
Query: 181 ttttttcttcaaattttcattcctctgtgggcatgaggttttttgtcttttctggttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttcttcaaattttcattcctctgtgggcatgaggttttttgtcttttctggttctt 440
Query: 241 cttatatttatccactcttttttgttgttgtactatgtttttgtcaactgatttctattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttatatttatccactcttttttgttgttgtactatgtttttgtcaactgatttctattt 500
Query: 301 tcacatcttaaatatgtaaactttcaggaatacatcccttttctgaagccgcttcatggg 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacgtcttaaatatgtaaactttcaggaatacatcccttttctgaagccgcttcatggg 560
Query: 361 aacctgcaaactcctttccaaaccttgcagatgctacagtgttcttgccctttagctgg- 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacctgcaaactcctttccaaaccttgcagatgctacagtgttcttgccctttagctggg 620
Query: 420 tattaagagctcatctgctaaaaagtgggcagttttgtagcccaaatgccatgattacct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattaagagctcatctgctaaaaagtgggcagttttgtagcccaaatgccatgattacct 680
Query: 480 cagcaaacagttcacgcagtggtgttttgggtagagtactaattagcttctgtggctaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcaaacagttcacgcagtggtgttttgggtagagtactaattagcttctgtggctaat 740
Query: 540 gagcttgtcacttgtaaatctattcattattatgaacgatagagctggtgttagaaatgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagcttgtcacttgtaaatctattcattattatgaacgatagagctggtgttagaaatgt 800
Query: 600 gctagtgttgcactaagacataattatttatgaaaagg 637
||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctagtgttgcactaagacataattatttatgaaaagg 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
