BAC Information

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BAC

Clone NameMSMg01-539L13
Chromosome11 (Build37)
Map Location 61,886,112 - 61,886,644
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneSpecc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539L13.T7 (MSMg01no539_l13.b1)MSMg01-539L13.TJ (MSMg01no539_l13.g1)
ACCAG606145AG606146
length791760
length of high quality
(start - end)		611 (46 - 656)611 (78 - 688)
definitionCHROMAT_FILE: MSMg01no539_l13.b1 PHD_FILE: MSMg01no539_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:46 2005CHROMAT_FILE: MSMg01no539_l13.g1 PHD_FILE: MSMg01no539_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTCATCAGATCTGGGACTGTGGCCTCAGAACCTCTAAGACTTGT
GGGAAATTAATCCCTATCATTTGATCCACTCCCTGAGTGGTGTTTGGTTA
TGTTATGATTTTAGTTATAAATTGGGCACTACTGGCACCTTTTAAATTCT
TGCACGGGCATCTCCTGGGCAGAATTCAGTATTTTCTTTCACTGGACTTT
GTAAATGCTTACATGTCCCCATGTCCTTAACCTAGGTTAGCCATCTTTTC
CTGCGAGTCTGGGATCGCTCTCTGAGAAGCAATGATCACCCTGGCATCCC
CAATACCTAATACACAGTAACTCAGCTATGTCCTAGTTTGTTCCTCTGTT
TCTGTGTTATGACGGTGAACAAAAGCAACTTGAGGGAAAGGGGCTTTATT
TGACTGACCCTTCCAGAACACAGTACATTGGTGAGGGGAGTCAACCAAGG
CCTGAAGCAGAAATCATTGATGGACACCGCTTACTGCCTTCCTCCCAAGC
TCACATCCCCCTACCTTATTTATACAGCCCAGGCCCACCGACCTACAGAT
GGAACCACCCTCATAAACTATGTACCCCCCGTATCAACTGGCAATCAAGA
AAATGCCCCACAGACAGATCCACAGGCCAATCTTATGGGAGTGGCTCTGT
GATTAAGGCTCCCTCTTCTTAGGTCTGCTAAACTGTCTACCAAGATTAGT
CCTACACGGTAACAAATGATTTACTCCAATGTGACTAAAGC

GCCAATGCAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGGAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATA
AGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTT
GCTAAACACATGAAACTCAAGGAGAATGAAGACTGAAGTGTGGACACTAT
GCCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_l13.b1 MSMg01no539_l13.b1 CHROMAT_FILE:
MSMg01no539_l13.b1 PHD_FILE: MSMg01no539_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:46 2005
         (611 letters)



>mm_chr11_61886112_61887122
          Length = 1011

 Score =  977 bits (505), Expect = 0.0
 Identities = 526/533 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctcatcagatctgggactgtggcctcagaacctctaagacttgtgggaaattaat 66
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaattctcatcagaactgagactgtggcctcagaacctctaagacttgtgggaaattaat 474

                                                                       
Query: 67  ccctatcatttgatccactccctgagtggtgtttggttatgttatgattttagttataaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ccctatcatttgatccactccctgagtggtgtttggttatgttatgattttagttataaa 414

                                                                       
Query: 127 ttgggcactactggcaccttttaaattcttgcacgggcatctcctgggcagaattcagta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttgggcactactggcaccttttaaattcttgcacgggcatctcctgggcagaattcagta 354

                                                                       
Query: 187 ttttctttcactggactttgtaaatgcttacatgtccccatgtccttaacctaggttagc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttttctttcactggactttgtaaatgcttacatgtccccatgtccttaacctaggttagc 294

                                                                       
Query: 247 catcttttcctgcgagtctgggatcgctctctgagaagcaatgatcaccctggcatcccc 306
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 catcttttcctgtgagtctgggatcgctctctgagaagcaatgatcaccctggcatcccc 234

                                                                       
Query: 307 aatacctaatacacagtaactcagctatgtcctagtttgttcctctgtttctgtgttatg 366
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aatacctaatacatagtaactcagctatgtcctagtttgttcctctgtttctgtgttatg 174

                                                                       
Query: 367 acggtgaacaaaagcaacttgagggaaaggggctttatttgactgacccttccagaacac 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 acggtgaacaaaagcaacttgagggaaaggggctttatttgactgacccttccagaacac 114

                                                                       
Query: 427 agtacattggtgaggggagtcaaccaaggcctgaagcagaaatcattgatggacaccgct 486
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 113 agtccattggtgaggggagtcaaccaaggcctgaagcagaaatcattgatggacactgct 54

                                                                
Query: 487 tactgccttcctcccaagctcacatccccctaccttatttatacagcccaggc 539
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  tactgccttgctcccaagctcacatccccctaccttatttatacagcccaggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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