Query= MSMg01no540_c05.b1 MSMg01no540_c05.b1 CHROMAT_FILE:
MSMg01no540_c05.b1 PHD_FILE: MSMg01no540_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:19 2005
(622 letters)
>mm_chr11_19191294_19192315
Length = 1022
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%)
Strand = Plus / Plus
Query: 5 gaattcctcccacttcctttattatttttgacatacttcaaaatgtgtgatttattgaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcccacttcctttattatttttgacatacttcaaaatgtgtgatttattgaca 264
Query: 65 tttggggtacatgtcaactgtagctattcaactatgaaaagaaaaaaatcaataaatgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttggggtacatgtcaactgtagctattcaactatgaaaagaaaaaaatcaataaatgtg 324
Query: 125 cacatggaagcaaacctgcctcggtctggctagaatttcagataagaccaaatcagaaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacatggaagcaaacctgcctcggtctggctagaatttcagataagaccaaatcagaaag 384
Query: 185 gtggatagtatatggtttgggccagatgcagtcctggaagcattgtatgccccaggttaa 244
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 385 gtggatagtatatggtttgggccagatgcagtcctggaagcatggtatgtcccaggttaa 444
Query: 245 gaactgcaagcaggtgggagaaggggaaagttgtagaaacggattcttttcctttcccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaactgcaagcaggtgggagaaggggaaagttgtagaaacggattcttttcctttcccca 504
Query: 305 tgaaacaagtatgggcagatgtggagagtgcatgcaaacaagctccagcttgggtttgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaaacaagtatgggcagatgtggagagtgcatgcaaacaagctccagcttgggtttgga 564
Query: 365 agtaaacattgcagtgcaaagatcaatcaaatcttcattcaccctgtgtcctgcctaggg 424
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtaaacattgcagtacaaagatcaatcaaatcttcattcaccctgtgtcctgcctaggg 624
Query: 425 tgttctctgtcctgatcctggacatgtgaataatttggcagttttagtagtgacagaggg 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 625 tgttctctgtcctgatcctggacatgcgaataatttggcagttttagtagtgacagaggg 684
Query: 485 atggccacggaccatactgatgcatcttccttgacatgtaatgtggttctgaaaagccca 544
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atggccacggaccatactgacgcatcttccttgacatgtaatgtggttctgaaaagccca 744
Query: 545 aagtaattcctccttttgctcataaattagaaaaactgcaagagctttaaaatcatacac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagtaattcctccttttgctcataaattagaaaaactgcaagagctttaaaatcatacac 804
Query: 605 actctgacctccccttct 622
||||||||||||||||||
Sbjct: 805 actctgacctccccttct 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_c05.g1 MSMg01no540_c05.g1 CHROMAT_FILE:
MSMg01no540_c05.g1 PHD_FILE: MSMg01no540_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:19 2005
(535 letters)
>mm_chr11_19245276_19246210
Length = 935
Score = 725 bits (375), Expect = 0.0
Identities = 474/563 (84%), Gaps = 88/563 (15%)
Strand = Plus / Minus
Query: 1 aagctacctagtttccatagttaatttgaggctgccctgtagttatacagtgggactctg 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 812 aagctacctagtttccatagttaatttgaggctgccctg-agttatacagtgggactctg 754
Query: 61 tct--------------------caaaacaaaacaaaacaaaacaaccaaagaaagcccc 100
||| |||||||||||||||||||||||||||||||||||||
Sbjct: 753 tctcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaccaaagaaagcccc 694
Query: 101 ctaacccgatgaaaaaccaccaccaccattaccaacaacaaaaacaaacacatagacaaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ctaacccgatgaaaaaccaccaccaccattaccaacaacaaaaacaaacacatagacaaa 634
Query: 161 caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa 220
|||||||||||||||||
Sbjct: 633 caaaacaaaacaaaaca------------------------------------------- 617
Query: 221 caaaacaaaacaaaacaaaaaaatccaaaaatgaagagaaaatgcaggaagttactggcc 280
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ----------------aaaaaaatccaaaaatgaagagaaaatgcaggaagttactggcc 573
Query: 281 atgcttggttctcagcggttctccctgggatcttattttcactaacaatctgaggcctac 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atgcttggttctcagcggttctccctgggatcttattttcactaacaatctgaggcctac 513
Query: 341 atcaacctgtaaactagtgacatattttcacttgattccagacttcagtgaggaagga-- 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atcaacctgtaaactagtgacatattttcacttgattccagacttcagtgaggaaggatt 453
Query: 399 ------ttttttttttttttggtagggtgccttatatcctaagtttcagtgtcctgcttc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttttttttttttttttttttggtagggtgccttatatcctaagtttcagtgtcctgcttc 393
Query: 453 tagaacatgaattaccagcaatttgcttgatggcatttctgcaaatctaaagcaatttcc 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tagaacatgaattaccagcaatttgcttgatggcatttctgcaaatctaaagcaatttcc 333
Query: 513 ctgtatagagtggagccagttgg 535
||||| |||||||||||||||||
Sbjct: 332 ctgtagagagtggagccagttgg 310
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
