Query= MSMg01no540_d10.b1 MSMg01no540_d10.b1 CHROMAT_FILE:
MSMg01no540_d10.b1 PHD_FILE: MSMg01no540_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:25 2005
(669 letters)
>mm_chr11_44227375_44228443
Length = 1069
Score = 1118 bits (578), Expect = 0.0
Identities = 648/674 (96%), Gaps = 5/674 (0%)
Strand = Plus / Plus
Query: 1 cagacgacagtgtgcttgtctaacattcatgaggagctggctttggtcctcagcactgca 60
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 196 cagacggcagtgtgcttgtctaacattcatgaggagctggctttggtccccagcactgca 255
Query: 61 taaactaagtatgttggtacatgccttaattctagcactggggcgagagaggcagagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 taaactaagtatgttggtacatgccttaattctagcactggggcgagagaggcagagaac 315
Query: 121 tcacaagttcaatgtcatccttagctacacaacaaggccaggctggactgcatgatagc- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tcacaagttcaatgtcatccttagctacacaacaaggccaggctggactgcatgatagcg 375
Query: 180 ----atgatatctcaaaaagaaagggaggaaataggggtggggagagtcggttgcttacc 235
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 376 tgatataatatctcaaaaagaaaggaaggaaataggggtggggagagtcggttgcttacc 435
Query: 236 tccttggcaggccccacatcccacactcataagacacgggagcagagacagcctggctgt 295
| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 436 ttcttggcaggcctcacatcccacactcataagacacaggagcagagacatcctggctgt 495
Query: 296 ctggaagaacagaagcttttggaatttgagggaaaatgtagtgtagctgtgacgaaaggg 355
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 496 ctggaagaacagaagcttttggaatttgagggaaaatatagtgtagctgtgacaaaaggg 555
Query: 356 cataaaatccagggtgacttaatcgccacacaaatggatgcaaagaaaaccatccaggtt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cataaaatccagggtgacttaatcgccacacaaatggatgcaaagaaaaccatccaggtt 615
Query: 416 tgccatgtcatcagcctgagtgaacctcaggtacagatatgaccagacaagatccatcgg 475
|||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct: 616 cgccatgtcatcagcctgagtgatcctaaggtacagatatgaccagacaagttccatcgt 675
Query: 476 gccatgaagatgctacggctatatcaggacacaatggccacgctccttgtagtgacttgc 535
||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 676 gccatgaagatactacggctacctcaggacacaatggccacactccttgtagtgacttgc 735
Query: 536 gtatgtttttcatgtgttggtttatttgtttatgctttctgagatgaaataaataaaaac 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gtatgtttttcatgtgttggtttatttgtttatgctttctgagatgaaataaataaaaac 795
Query: 596 tcttctttgcagtcatggtttctgtacttgctcagcagagtcgggcgttctgtttcggag 655
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 796 tcttctttgcagtcatggtttctgtacttgctcagcagagtcaggcattctgtttcggag 855
Query: 656 cctatttgggtgca 669
||||||||||||||
Sbjct: 856 cctatttgggtgca 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_d10.g1 MSMg01no540_d10.g1 CHROMAT_FILE:
MSMg01no540_d10.g1 PHD_FILE: MSMg01no540_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:25 2005
(615 letters)
>mm_chr11_44434675_44435690
Length = 1016
Score = 1160 bits (600), Expect = 0.0
Identities = 612/616 (99%), Gaps = 1/616 (0%)
Strand = Plus / Minus
Query: 1 taagaaacttacttgttttgtcatggagtcgatgaggcgcacatagaaatcctgttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 taagaaacttacttgttttgtcatggagtcgatgaggcgcacatagaaatcctgttctgt 757
Query: 61 ccgtattcctgggggtggagggaggaaggaaaattaagagagaggggataagccctgaaa 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ccgtatccctgggggtggagggaggaaggaaaattaagagagaggggataagccctgaaa 697
Query: 121 gaaaaaagaactccacaatacacataacaatagcaacaaacaaaaacaacgcaaaggggt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 696 gaaaaaagaactccacaattcacataacaatagcaacaaacaaaaacaacgcaaaagggt 637
Query: 181 ccaaggccaaggggaactcctgctgtccagaaaggggcgagccaggacgctccttcccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ccaaggccaaggggaactcctgctgtccagaaaggggcgagccaggacgctccttcccag 577
Query: 241 aatccagaaaggatctgcgggcctagttcaaatgctccccttagaagccagcctcctcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aatccagaaaggatctgcgggcctagttcaaatgctccccttagaagccagcctcctcca 517
Query: 301 agcactggagctagaaaagaggtggggaccccgccccccaacctggccactctcccttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agcactggagctagaaaagaggtggggaccccgccccccaacctggccactctcccttcc 457
Query: 361 caggctagagcccttctgaagccgcctggatccatcaggagctcctccactcccagcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caggctagagcccttctgaagccgcctggatccatcaggagctcctccactcccagcctc 397
Query: 421 tccccagcccaccctccccacccc-caaaaaaaccgaggagccaagcgacctggaatttt 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 396 tccccagcccaccctccccacccctcaaaaaaaccgaggagccaagcgacctggaatttt 337
Query: 480 ggccaagcaacacaggcctcaagaagtgggggaaagaggacaaccaagtggtcttgtcag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggccaagcaacacaggcctcaagaagtgggggaaagaggacaaccaagtggtcttgtcag 277
Query: 540 ggccaagtggcctctggtcagccctgggctgaccaagccgccctctgcctcctcaggtga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggccaagtggcctctggtcagccctgggctgaccaagccgccctctgcctcctcaggtga 217
Query: 600 gaaacttcctagaatg 615
||||||||||||||||
Sbjct: 216 gaaacttcctagaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
