Query= MSMg01no541_h18.b1 MSMg01no541_h18.b1 CHROMAT_FILE:
MSMg01no541_h18.b1 PHD_FILE: MSMg01no541_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:09 2005
(718 letters)
>mm_chr11_79947611_79948729
Length = 1119
Score = 1299 bits (672), Expect = 0.0
Identities = 705/716 (98%), Gaps = 1/716 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatctagagattcctgaagaaaccataactactttggcagctgacttcccttga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatctagagattcctgaagaaaccataactactttggcagctgacttcccttga 263
Query: 64 tgctccccgtcgtcagccttgtagagactgtgtggtcctgatgactctagagtatggtga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgctccccgtcgtcagccttgtagagactgtgtggtcctgatgactctagagtatggtga 323
Query: 124 ctttaaagaagagcttatttctcttaatgtaaattttgaaagacttttgtatttttgtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttaaagaagagcttatttctcttaatgtaaattttgaaagacttttgtatttttgtgg 383
Query: 184 ttcaagtttaaaatgaaaaatttgagttacaaattgtatatatgactgtgacattttttc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcaagtttaaaatgaaaaatttgagttacaaattgtatatatgactgtgacattttttc 443
Query: 244 tgaatgtttggattatctatttttgctttattgtatactttctgtatgtgtgaactgttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaatgtttggattatctatttttgctttattgtatactttctgtatgtgtgaactgttt 503
Query: 304 gtagaatacttttcacttagagatttctagagctgtttcagttctaagcttacctgtcat 363
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtagaataattttcacttatagatttctagagctgtttcagttctaagcttacctgtcat 563
Query: 364 ttttcccttttcctgtaattgtcctctcctgccaagcagcagagctgtgacactgtaaat 423
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 ttttcccttttcctgtaattgtcctctcctgccaagcagcagagctgtgccactgtaaat 623
Query: 424 aggcagcctctaaagttacacaatggaaaacagttatgtacagggtattttaaaatgtcc 483
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggcagtctctaaagttacacaatggaaaacagttatgtacagggtattttaaaatgtcc 683
Query: 484 taggaagtaaattatgcctcggttgtggaaagcattgcctttgtttcttgtgccttcttc 543
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 taggaagtaaattatgcctcggttgtgaaaagcattgcctttgtttcttgtgccttcttc 743
Query: 544 caccatgttttacatgtaatcattgagtcattagcactggcagagtaaagccttctgaat 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caccacgttttacatgtaatcattgagtcattagcactggcagagtaaagccttctgaat 803
Query: 604 tctagcatttgcctagataagaccatccgtcactcactccctgtagttacacagtccagt 663
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 804 tctagcatttgcctagataagaccatctgtcactcactccctgtagttacacagtccagt 863
Query: 664 gaatcttgccaactcaaatcatttatacattttctggta-ttttatatcattgttt 718
||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||
Sbjct: 864 gaatcttgccaactcaagtcgtttgtacattttctggtacttttatatcattgttt 919
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1119
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1109
Effective search space: 785172
Effective search space used: 785172
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_h18.g1 MSMg01no541_h18.g1 CHROMAT_FILE:
MSMg01no541_h18.g1 PHD_FILE: MSMg01no541_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:09 2005
(683 letters)
>mm_chr11_80086649_80087731
Length = 1083
Score = 1038 bits (537), Expect = 0.0
Identities = 644/695 (92%), Gaps = 32/695 (4%)
Strand = Plus / Minus
Query: 1 agaaagaactacaaaggatgagtgtattcagcagtaagtctcagaggctgaaaacattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agaaagaactacaaaggatgagtgtattcagcagtaagtctcagaggctgaaaacattct 744
Query: 61 agaactaggtaagattgtatggaagctagaagcaaaagtttcctttacatcaccagttag 120
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 743 agaactaggtaagattgtatggaagctagaagcaaaagttacctttatatcaccagttag 684
Query: 121 aacaatgaacgtaatggagaaacagctgcagcaatcaggagcccggcctgaccaggttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aacaatgaacgtaatggagaaacagctgcagcaatcaggagcccggcctgaccaggttag 624
Query: 181 gtaagatggctctgaatcataaatacagccaacagaacagaggactgggagaagggcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtaagatggctctgaatcataaatacagccaacagaacagaggactgggagaagggcagt 564
Query: 241 cagtgctaggtttcaaaggtcttgactacagtgccacagagaatacaggcaggggaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cagtgctaggtttcaaaggtcttgactacagtgccacagagaatacaggcaggggaaatg 504
Query: 301 acagtgtggacttcagtagcaaggacagcactggtgacagcaacttaggagtcaagagta 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 503 acagtgtggacttcagtagcaaggacagcactgatgacagcaacttaggagtcaagagta 444
Query: 361 tgctaggccctgtgaactacagagtaacgagcagtttcctagtgatgacttctagaaacg 420
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 443 tgctagaccctgtgaactacagagtaactagcagtttcctagtgatgacttctagaaacg 384
Query: 421 agggcaaaagggtctgaaggagcacaaaagccttgaaaattttgccttgcaaatttaaat 480
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 aaggcaaaagggtctgaaggagcacaaaagccttgaaaattttgccttgccaatttaaat 324
Query: 481 tctttttactaataaaaatgtcagaaatagagccaggcgtgg---tgg---cac-----t 529
||||||||| ||||||||| |||||||||||||| ||||||| ||| ||| |
Sbjct: 323 tctttttaccaataaaaatatcagaaatagagccgggcgtgggcgtggtgacacacacct 264
Query: 530 ttaa-cgccagcactcgggaggcagaggcaggcagatttctgagttc-aagaccagcctg 587
|||| | ||||||||||| ||||||||||||||| ||| ||||||||
Sbjct: 263 ttaatc-ccagcactcgg--------------cagatttctgagttcgaag-ccagcctg 220
Query: 588 gtctacagagtgagttccaggacagccagagctacacagtgaaaccctgtctcgaaaccc 647
||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||
Sbjct: 219 gtctacagagtgagttccaggacagccagggctacacagacaaatcctgtcttgaaaccc 160
Query: 648 tgtcccccacccaaaaaaatgtcagaagtatttaa 682
|| ||||| ||| ||| |||||||| |||||||
Sbjct: 159 tgcccccccccccaaa---tgtcagaaatatttaa 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
