Query= MSMg01no541_m12.b1 MSMg01no541_m12.b1 CHROMAT_FILE:
MSMg01no541_m12.b1 PHD_FILE: MSMg01no541_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:34 2005
(336 letters)
>mm_chr11_60125732_60126467
Length = 736
Score = 621 bits (321), Expect = 0.0
Identities = 321/321 (100%)
Strand = Plus / Minus
Query: 5 gaattctctccagctgtccaagcaaaccgacagctttttgtctggaattagtctcagcac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattctctccagctgtccaagcaaaccgacagctttttgtctggaattagtctcagcac 423
Query: 65 caaagtgaacaatgctagagagggaccttcagaccagataaggttgcctcactgcaagtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caaagtgaacaatgctagagagggaccttcagaccagataaggttgcctcactgcaagtc 363
Query: 125 ctgggaaagggctagctcagatggaagctgcataccaggagactagctgcttaccaagac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctgggaaagggctagctcagatggaagctgcataccaggagactagctgcttaccaagac 303
Query: 185 cttaatgtgactgttttcatcctgttactgagaaactgtgttatagctcataagcaaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cttaatgtgactgttttcatcctgttactgagaaactgtgttatagctcataagcaaagg 243
Query: 245 gttctggcctggaagccaggcagagaagggtgcatgcttgtgtgtgtgtgtgtgtgtgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttctggcctggaagccaggcagagaagggtgcatgcttgtgtgtgtgtgtgtgtgtgtg 183
Query: 305 tgtgtgtgtgtgtgtgtgtgt 325
|||||||||||||||||||||
Sbjct: 182 tgtgtgtgtgtgtgtgtgtgt 162
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_m12.g1 MSMg01no541_m12.g1 CHROMAT_FILE:
MSMg01no541_m12.g1 PHD_FILE: MSMg01no541_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:34 2005
(625 letters)
>mm_chr11_59964305_59965332
Length = 1028
Score = 1187 bits (614), Expect = 0.0
Identities = 624/628 (99%), Gaps = 3/628 (0%)
Strand = Plus / Plus
Query: 1 ttctggagatagatttttt-gttttgttttaagtaaagatgaagaggcttttctgcattc 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctggagatagatttttttgttttgttttaagtaaagatgaagaggcttttctgcattc 260
Query: 60 tgagtattgccaaaca--acatttctgagaatggagcctttctagagataaattgtagtg 117
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtattgccaaacataacatttctgagaatggagcctttctagagataaattgtagtg 320
Query: 118 cttcttggaggatgattctggagtatttctggaaacaatgggacacttttggatctgagg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcttggaggatgattctggagtatttctggaaacaatgggacacttttggatctgagg 380
Query: 178 tacttctggaggtaacatgagcatctggagatggggcacagcttttctggaaagcttctt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacttctggaggtaacatgagcatctggagatggggcacagcttttctggaaagcttctt 440
Query: 238 ggagtagaaatagagttgttaggagagcagtgacatttctggagatggatcatacttgaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagtagaaatagagttgttaggagagcagtgacatttctggagatggatcatacttgaa 500
Query: 298 gagaaaggtgtttctagagatggaacacctttttggagctaaggaatttctggaattgga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaaaggtgtttctagagatggaacacctttttggagctaaggaatttctggaattgga 560
Query: 358 gggaagcactcctgaggaggaaatgggtggttcttagagatggtgttttggatcaaggat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaagcactcctgaggaggaaatgggtggttcttagagatggtgttttggatcaaggat 620
Query: 418 agtcatttcttttttttttttttttttaagattttttatttattattatatgtagtacac 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 agtcatttctttttttttttttttttaaagattttttatttattattatatgtagtacac 680
Query: 478 tgtagctgtcttcagacacaccagaagagggagtcagatcttgttacggatggttgtgag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtagctgtcttcagacacaccagaagagggagtcagatcttgttacggatggttgtgag 740
Query: 538 ccaccatgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctctt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaccatgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctctt 800
Query: 598 acccactgagccatctcaccagccccct 625
||||||||||||||||||||||||||||
Sbjct: 801 acccactgagccatctcaccagccccct 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1028
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1018
Effective search space: 626070
Effective search space used: 626070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
