BAC Information

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BAC

Clone NameMSMg01-541O19
Chromosome11 (Build37)
Map Location 68,513,322 - 68,513,912
singlet/doubletsinglet
Overlap geneMyh10
Upstream geneRcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541O19.T7 (MSMg01no541_o19.b1)MSMg01-541O19.TJ (MSMg01no541_o19.g1)
ACCAG607824AG607825
length789775
length of high quality
(start - end)		596 (44 - 639)377 (75 - 451)
definitionCHROMAT_FILE: MSMg01no541_o19.b1 PHD_FILE: MSMg01no541_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:46 2005CHROMAT_FILE: MSMg01no541_o19.g1 PHD_FILE: MSMg01no541_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGAGATCTGCATGCCTCTGCCCGGGTTAAAGGCATACACCACTGT
GTCTGTCTTCTTCTACATATTACCAATTCAAAGTGTAAATGACTAGATGT
ACTGAAATAATGTTTGAAGACTGCTAAAGAGGGGCTCTGGAGGGTGGCAT
GCAAGAGAGCGTGTGGCAAAAAGGCTAGGGGATTTAATCATAACTGAGCG
TTCATTTGCAGGAGGAGCCAGGCAAGGAAGAGTAGAAGAGCAAGGGGCGC
CAGGCTCCGAGGTTGCCGTGCAGAGCAGGAGCAGCTTCAGTTGGGTAACA
GGCAGGCAGAGGATGGATGTTGAGGAAAGGGTTGGGGATGAGACTGAGGC
TAAGGCTGTCCTGGGGCTGGCATTTATGCTGCAGGTGCCAATCCTGTCTG
TGCATAGAAGTTACTGAAAACAATTTAGGGTAAAGCAGGGGAAGAATGCC
AAACACTGCAAAGCATCTAGAATGGGCTAGATGTCAGGGCTCATGCCTGT
GATCCTAGCGATTGGGAAGAGGGGTGTAGGCAGGAGGACTTCCATGAGTT
AGAGGCCAGCCTTGGCTAAAGAGTATAAAACCCTGTTTCAGAAAGTTACA
AGGGCTGGAGAGATGGCTCACGGGTGAAGAGCACTGGCTGCTCTTCTAGA
GGAAACATGTTTGATTCCCAGCACTCACATGGTGGCTCACAATCATCTGT
AACTCCGGTTCCAAGGGGTCCATGCCCTCTTCTGGCTTC

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATGAACCAAGCAGAAGAACTGGGA
AACTTCCCAGTGAAACTCTGGGGCCGTGGAGGCTGTTGTGTTTTATAAAA
AGATAGAGAAGAAGGGGTATGTTTGGCGGAGGCTTGGTATGGTGTGGGGA
AGGGGGTGCCTATGTGGGGCCCATGCTGAGGCATCCCTGCCCCCTGAGGT
ACCAGCCACATGATGGTATAGTATAGAATAGCGTTTATTCAGGGCATGGG
GAGGGGAGTTGAGAGAAAGGCAGAAAGAGAGAGAGAGAGAAGCAAGAAGA
GGAGTAGAGGCTGACTGACCATGAGCTTGGGGGGAGGAATGGAGAGAGAG
GGGGAAGAGGGTAAGGAGCANGAGCAAGGGGTTGAGAGAGTGAGGAGGGG
GNGANNNNNNNNNNNNNNNNNNNNNNNNGNNNNNGNNNNNNNGGNNGGNG
GNNNGGNNNNNGNNGGGGNGGGGGNNGGGGGNNNGGNNNGNGNGGGGGGG
GGGGGGGGGGGGGGGNNNGGNGGNGGGGGGGGGGGGGNGGGGNNGGGNGG
NNNNGGGGGNGGGNNGGGGGNGGGGGGNNGGGGGGGGGGNGGGGGGGGGG
GNNGGGGGGGGGGGNGNGGGGGGNGGGGGGGGGAAGGGGGNNGGGGGGGN
NNGGGGNNGGGGGGGGGGGGAGGGGGGGGNGNNNGGNNNGGGGGGGGGNG
GGGGGGGGGNGGGGNGNNGNNGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_o19.b1 MSMg01no541_o19.b1 CHROMAT_FILE:
MSMg01no541_o19.b1 PHD_FILE: MSMg01no541_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:46 2005
         (596 letters)



>mm_chr11_68513118_68514112
          Length = 995

 Score = 1013 bits (524), Expect = 0.0
 Identities = 575/592 (97%), Gaps = 1/592 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagagatctgcatgcctctgcccgggttaaaggcatacaccactgtgtctgtc 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagagatctgcatgcctctgcccaggttaaaggcatacaccactgtgtctgtc 264

                                                                       
Query: 65  ttcttctacatattaccaattcaaagtgtaaatgactagatgtactgaaataatgtttga 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 ttcttctacatattaccaattcaaagtgtaaatgactagatgtattgaaataatgtttga 324

                                                                       
Query: 125 agactgctaaagaggggctctggagggtggcatgcaagagagcgtgtggcaaaaaggcta 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 agactgctaaagaggggctctggagggtggcatgcaagggagcgtgtggcaaaaaggcta 384

                                                                       
Query: 185 ggggatttaatcataactgagcgttcatttgcaggaggagccaggcaaggaagagtagaa 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggaatttaatcataactgagcgttcatttgcaggaggagccaggcaaggaagagtagaa 444

                                                                       
Query: 245 gagcaaggggcgccaggctccgaggttgccgtgcagagcaggagcagcttcagttgggta 304
           || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaccaaggggcgccaagctccaaggttgccgtgcagagcaggagcagcttcagttgggta 504

                                                                       
Query: 305 acaggcaggcagaggatggatgttgaggaaagggttggggatgagactgaggctaaggct 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acaggcaggcagagggtggatgttgaggaaagggttggggatgagactgaggctaaggct 564

                                                                       
Query: 365 gtcctggggctggcatttatgctgcaggtgccaatcctgtctgtgcatagaagttactga 424
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 gtc-tggggctggcatttatgctgcaggtgccaatcctgtctgcgcatagaagttactga 623

                                                                       
Query: 425 aaacaatttagggtaaagcaggggaagaatgccaaacactgcaaagcatctagaatgggc 484
           |||||| | |||||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 624 aaacaactgagggtagagcaggggaagaacgccaaacactgcaaagcgtctagaatgggc 683

                                                                       
Query: 485 tagatgtcagggctcatgcctgtgatcctagcgattgggaagaggggtgtaggcaggagg 544
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagatgtcagggctcatgtctgtaatcctagcgattgggaagaggggtgtaggcaggagg 743

                                                               
Query: 545 acttccatgagttagaggccagccttggctaaagagtataaaaccctgtttc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acttccatgagttagaggccagccttggctaaagagtataaaaccctgtttc 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space:   577210
Effective search space used:   577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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