BAC Information

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BAC

Clone NameMSMg01-542B23
Chromosome11 (Build37)
Map Location 4,611,462 - 4,612,050
singlet/doubletsinglet
Overlap geneZmat5
Upstream geneOsbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik
Downstream geneCabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542B23.T7 (MSMg01no542_b23.b1)MSMg01-542B23.TJ (MSMg01no542_b23.g1)
ACCAG607974AG607975
length746765
length of high quality
(start - end)		44 (46 - 89)593 (78 - 670)
definitionCHROMAT_FILE: MSMg01no542_b23.b1 PHD_FILE: MSMg01no542_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:03 2005CHROMAT_FILE: MSMg01no542_b23.g1 PHD_FILE: MSMg01no542_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATGGGGTGTGAGGGGGGAAAGACACGGATGGACAGACAGATAG
ACCAGGAAAGAGACAGACTNGAGAAACTGAGGAAAAGTACTAATTTTTTC
AGGTGTTCATGATCCCAGTTAGAGATGGAAGACGNTAGTTTTTGTATATA
CCCTTACCCAACCCNTTTTTTGACTTGAATTCTTTTTAAATCTATTTAAA
TTGGGAGNAAAACATGCCATGGGGACCGCCCTTTATTTAGAGCCTTAAGC
AAAGAGATTGTTTTAAACCGAAATTTGGGAACCTTCGGGAAAAAAAAAAA
CGGGTGTTTCCCTTAAAAAAAAAATTNTAACAACNCACCCNCACGCCGAA
AACACTTTCCTNTACACACCCGCGGGGTTTGGNNGTAAAANAANNATAAT
GGNNNNTTTGTTTCCNTCTTTCTTATANNAAATTATTTTTGGTGTGCCCA
CCCCCACAANNNNNTTTTTTCGTTTGGNNNGGGGGGGGAGTANNCCCCCC
CCTCTCCTCCCNNGGGGGGGCGGTGTCCCNCTTCTTTCTTTTATTTAAAA
AAAAAAAACAAAAAAAACACAACCGCCCCGCCGGTGGGCGGCGGGGCTCG
CTCCCCCCACTTGGGGCGAGGGCGAGGGGAGGNTGCTTTTTNTTATATTT
TTTTTATNTATTATCCCTTTCCCCCCCCCACCCCTCCCGAGATGAA

NNAACCATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGATCATCTGTCAGATATTT
AGGCTATCAATTATTTTTAATGTTAAGAATGCTTTTAAATACCCGGTTAC
CCAGGTTTGTTGTGTTTTGAGACATGCTCTGGCTCTTTAGTCCAGGCTGG
CCAGGAAGTTGAGACCCTCCTAGCTCAGCTTGCTGAGTGTTGTGGTTAGT
GGGTTACACCGATTATTCCTAGGGCCAGGCTGAGCACAGCCACTCTGACT
TACTCTTAATTGTTAAGCTCTTGGGATATGAAAAGAACTTGTTCAGTAAG
AAAAATTTCTCCAACTCTATAAATTGTGCTACGTATCGGCTAAGAGCTGC
TGCTCCTTCTGTGAGCTGAAATAACTAATGATCAGAATGTTCCCAGCAAG
GCTGCCTTCAGGATGGAGTGTGAAGTTTATTCCTCAGGGTTCTGTTCTTA
CGGGGAATCGGGACTTAGGGTTCAAATGCAGATCTCTAGGTCATTTTCAG
ATCTGTTAAGTCAGAATTTCTGAGACCTGGACACAGGACACAGTTTTGAC
AGGAAGGGTAGGTGTTGAACCCAGGGCCACTGTCCTAGCCAAGTGGTGTG
TGAGTGTAGTGTTTGTGAGTATGATGTTTGTGGTGGTGGTGTGTGTGANA
TATNNNTTTGNNNNATTGTTNGGTNTTTTTGTGGATGGGTTAAAGTAGGT
TTTGTTGTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_b23.g1 MSMg01no542_b23.g1 CHROMAT_FILE:
MSMg01no542_b23.g1 PHD_FILE: MSMg01no542_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:03 2005
         (593 letters)



>mm_chr11_4611262_4612254
          Length = 993

 Score = 1108 bits (573), Expect = 0.0
 Identities = 587/593 (98%), Gaps = 4/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagatcatctgtcagatatttaggctatcaattatttttaatgttaagaatgctttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagatcatctgtcagatatttaggctatcaattatttttaatgttaagaatgctttta 260

                                                                       
Query: 61  aatacccggttacccaggtttgttgtgttttgagacatgctctggctctttagtccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatacccggttacccaggtttgttgtgttttgagacatgctctggctctttagtccaggc 320

                                                                       
Query: 121 tggccaggaagttgagaccctcctagctcagcttgctgagtgttgtggttagtgggttac 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tggccaggaagttgagaccctcctagcttagcttgctgagtgttgtggttagtgggttac 380

                                                                       
Query: 181 accgattattcctagggccaggctgagcacagccactctgacttactcttaattgttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accgattattcctagggccaggctgagcacagccactctgacttactcttaattgttaag 440

                                                                       
Query: 241 ctcttgggatatgaaaagaacttgttcagtaagaaaaatttctccaactctataaattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttgggatatgaaaagaacttgttcagtaagaaaaatttctccaactctataaattgt 500

                                                                       
Query: 301 gctacgtatcggctaagagctgctgctccttctgtgagctgaaataactaatgatcagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctacgtatcggctaagagctgctgctccttctgtgagctgaaataactaatgatcagaa 560

                                                                       
Query: 361 tgttcccagcaaggctgccttcaggatggagtgtgaagtttattcctcagggttctgttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcccagcaaggctgccttcaggatggagtgtgaagtttattcctcagggttctgttc 620

                                                                       
Query: 421 ttacggggaatcgggacttagggttcaaatgcagatctctaggtcattttcagatctgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttacggggaatcgggacttagggttcaaatgcagatctctaggtcattttcagatctgtt 680

                                                                       
Query: 481 aagtcagaatttctgagacctggacacaggacacagttttgacaggaagggtaggtgttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||   |  ||||||
Sbjct: 681 aagtcagaatttctgagacctggacacaggacacagttttgacaggaac--t--gtgttg 736

                                                                
Query: 541 aacccagggccactgtcctagccaagtggtgtgtgagtgtagtgtttgtgagt 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aacccagggccactgtcctagccaagtggtgtgtgagtgtagtgtttgtgagt 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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