BAC Information

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BAC

Clone NameMSMg01-542C22
Chromosome11 (Build37)
Map Location 54,311,518 - 54,482,991
singlet/doubletdoublet
Overlap geneFnip1, Rapgef6
Upstream geneLOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411
Downstream geneCdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542C22.T7 (MSMg01no542_c22.b1)MSMg01-542C22.TJ (MSMg01no542_c22.g1)
ACCAG608020AG608021
length749749
length of high quality
(start - end)		631 (51 - 681)645 (78 - 722)
definitionCHROMAT_FILE: MSMg01no542_c22.b1 PHD_FILE: MSMg01no542_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:07 2005CHROMAT_FILE: MSMg01no542_c22.g1 PHD_FILE: MSMg01no542_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,311,518 - 54,312,144)(54,482,417 - 54,482,991)
sequence
NNTTTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTCCTTTTGTAGATTCTAGTTGCTAAAGAAGTTTACTG
AGACAGGTAATAGAATTTTTGGAGATTTCAAAGAATTTTCTAGCGTTATA
CTTTTTAACATAGTTTGTGCCCATAGCCGTATGAGGCTATTTATTTAATA
CAACTTGAATCACTTTAGTTCCTCCATCTCAGGACTCGTGTTTCAGTTGT
TCTGTTACTGCCAATGGTTACTGCACAGGCATTGCTAATGTAGTGCGTTT
GCATCGAGGTTGGAAACTGAAAATGCTGCTGTAGAGACTGGAACTACTGT
TGTGTGGATGCCAGATTTACTTGTTTCTTTCTCTTTTTAATTTTAATTTT
ATTTTTCTACTTATTCACTTTATTTCCCACTCACTGCCCTCCTCCCAATC
ACCCCCTCCCACAATTTCTCCCTGGCCCCCTTCTCCTCTGAGGGGGTGCC
CCGCCTCCCCGTGTATGCCCCATCCCTTCACTTCAAGTCTGTGCAAGGCT
AGGTGCTTCCTCTCCCACTGAGGCTAGACAAAGCAGCCCACATACAGGCA
ACAGCTTTTGGGATAGCCCCTGTTCCAGTCGTTCAGGACCTACATGAAAG
CCAAGCTGTATGTATGTGCTGGGAGGCCTAGGTCCAGCCGGTGTATGTTC
TTTGGTTGGTGGTTCAGACTCTGGGAGCCCTGACTTACCAGATTTGCTT

TTATCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGATAAAATTAAAAGATAAAT
GAAACTCTAATAAAGATGTAGCATGGCTAAATGTACTTTCTGGGAAAGAG
TTTAAATGCAAGCAAACAGTTACAATATAACTGTAACTTTTGGGAAAGAA
ATGTTCTAGAAAACTGAAGTACTAGTTAGATGTGCTAGGACTTTAAAAGA
GGCGCAGAATAATTCTTTACTACTTAGGTTAGAAAGCAGATGAGACAATT
TGCATTCAGATGATTTCAGGGAGCTCAACATTTTTATTTTATTTGCTTAT
TGGTACTTTACATAACCACCATACAGAACTACTGATATAGTCAGAAAAGT
AATTGGAAAAACTAGGGCTCAAATCTTAGCAAGTTATATAAAAACTGCTC
CAGGGCCTGGAGATATGGCTCAGCAGTCAAAGGCACTGACCTTGCTTGCA
GAGGACCCGAGTTCAATTCCCAGCACTTACATGGTTAATCACAAGCATCT
GAGACACTAGTTCCAGAGAGGCCAACACCTTCTCTGGACTCTGCAAGCAT
TGTACATATGTGATACACAGACATACATGCAGGCAAACATATATAAATTA
AAAATAAAACAAAACTACTTGGGGTTCAATTTCTTCAGATGTAAAGGGAG
GTTGACTATTGCTTACCTGTGAGGATTACTGTAATGAAAGATTACTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_c22.b1 MSMg01no542_c22.b1 CHROMAT_FILE:
MSMg01no542_c22.b1 PHD_FILE: MSMg01no542_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:07 2005
         (631 letters)



>mm_chr11_54311314_54312344
          Length = 1031

 Score = 1174 bits (607), Expect = 0.0
 Identities = 622/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttccttttgtagattctagttgctaaagaagtttactgagacaggtaataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttccttttgtagattctagttgctaaagaagtttactgagacaggtaataga 264

                                                                       
Query: 65  atttttggagatttcaaagaattttctagcgttatactttttaacatagtttgtgcccat 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 atttttggagatttcaaagaattttctagcgttatactttttaatatagtttgtgcccat 324

                                                                       
Query: 125 agccgtatgaggctatttatttaatacaacttgaatcactttagttcctccatctcagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccgtatgaggctatttatttaatacaacttgaatcactttagttcctccatctcagga 384

                                                                       
Query: 185 ctcgtgtttcagttgttctgttactgccaatggttactgcacaggcattgctaatgtagt 244
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 ctcatgtttcagttgttctgttactgccaatggtcactgcacaggcattgctaatgtagt 444

                                                                       
Query: 245 gcgtttgcatcgaggttggaaactgaaaatgctgctgtagagactggaactactgttgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcgtttgcatcgaggttggaaactgaaaatgctgctgtagagactggaactactgttgtg 504

                                                                       
Query: 305 tggatgccagatttacttgtttctttctctttttaattttaattttatttttctacttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggatgccagatttacttgtttctttctctttttaattttaattttatttttctacttat 564

                                                                       
Query: 365 tcactttatttcccactcactgccctcctcccaatcaccccctcccacaatttctccctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcactttatttcccactcactgccctcctcccaatcaccccctcccacaatttctccctg 624

                                                                       
Query: 425 gcccccttctcctctgagggggtgccccgcctccccgtgtatgccccatcccttcacttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcccccttctcctctgagggggtgccccgcctccccgtgtatgccccatcccttcacttc 684

                                                                       
Query: 485 aagtctgtgcaaggctaggtgcttcctctcccactgaggctagacaaagcagcccacata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagtctgtgcaaggctaggtgcttcctctcccactgaggctagacaaagcagcccacata 744

                                                                       
Query: 545 caggcaacagcttttgggatagcccctgttccagtcgttcaggacctacatgaaagccaa 604
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 caggcaacagcttttgggatagcccctgctccagtcgttcaggacctacatgaaagccaa 804

                                      
Query: 605 gctgtatgtatgtgctgggaggcctag 631
           ||||||| |||||||||||||||||||
Sbjct: 805 gctgtatatatgtgctgggaggcctag 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_c22.g1 MSMg01no542_c22.g1 CHROMAT_FILE:
MSMg01no542_c22.g1 PHD_FILE: MSMg01no542_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:08 2005
         (645 letters)



>mm_chr11_54482417_54483461
          Length = 1045

 Score = 1104 bits (571), Expect = 0.0
 Identities = 574/575 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccgataaaattaaaagataaatgaaactctaataaagatgtagcatggctaaatgtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tccgataaaattaaaagataaatgaaactctaataaagatgtagcatggctaaatgtact 516

                                                                       
Query: 61  ttctgggaaagagtttaaatgcaagcaaacagttacaatataactgtaacttttgggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttctgggaaagagtttaaatgcaagcaaacagttacaatataactgtaacttttgggaaa 456

                                                                       
Query: 121 gaaatgttctagaaaactgaagtactagttagatgtgctaggactttaaaagaggcgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaaatgttctagaaaactgaagtactagttagatgtgctaggactttaaaagaggcgcag 396

                                                                       
Query: 181 aataattctttactacttaggttagaaagcagatgagacaatttgcattcagatgatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aataattctttactacttaggttagaaagcagatgagacaatttgcattcagatgatttc 336

                                                                       
Query: 241 agggagctcaacatttttattttatttgcttattggtactttacataaccaccatacaga 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 335 agggagctcaacatttttattttatttgcttattggtactttacctaaccaccatacaga 276

                                                                       
Query: 301 actactgatatagtcagaaaagtaattggaaaaactagggctcaaatcttagcaagttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 actactgatatagtcagaaaagtaattggaaaaactagggctcaaatcttagcaagttat 216

                                                                       
Query: 361 ataaaaactgctccagggcctggagatatggctcagcagtcaaaggcactgaccttgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ataaaaactgctccagggcctggagatatggctcagcagtcaaaggcactgaccttgctt 156

                                                                       
Query: 421 gcagaggacccgagttcaattcccagcacttacatggttaatcacaagcatctgagacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gcagaggacccgagttcaattcccagcacttacatggttaatcacaagcatctgagacac 96

                                                                       
Query: 481 tagttccagagaggccaacaccttctctggactctgcaagcattgtacatatgtgataca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  tagttccagagaggccaacaccttctctggactctgcaagcattgtacatatgtgataca 36

                                              
Query: 541 cagacatacatgcaggcaaacatatataaattaaa 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  cagacatacatgcaggcaaacatatataaattaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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