BAC Information

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BAC

Clone NameMSMg01-542C24
Chromosome11 (Build37)
Map Location 105,506,561 - 105,507,212
singlet/doubletsinglet
Overlap geneTanc2
Upstream geneItgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807
Downstream geneLOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542C24.T7 (MSMg01no542_c24.b1)MSMg01-542C24.TJ (MSMg01no542_c24.g1)
ACCAG608024AG608025
length744736
length of high quality
(start - end)		692 (53 - 744)648 (89 - 736)
definitionCHROMAT_FILE: MSMg01no542_c24.b1 PHD_FILE: MSMg01no542_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:08 2005CHROMAT_FILE: MSMg01no542_c24.g1 PHD_FILE: MSMg01no542_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NAATTAACATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTTGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC
ATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACA
ATTGCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGT
TCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGT

TTAATTTATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAATTAACAGC
ATTTGCTGTGAAGGTTGCTGGTTTGAAAAGAAAATTCATTTATAAAGAGA
TCTCTTCAAGTAGCAACTAGTCAGGTGTAAGGGTTGTGTTATACCACCCG
AGAGACCTCATTCCTTTCCCAAGTTATTTCCCGGGAAGCTCAAACAAGAC
TGTTAACTCTGTTTACAGTGAGGATACTTTAACTTCCCTGATATCTAGAC
TTTTACTTTGTCAATTGTAGTCTTGGTGGGTGTCCCTCAGGAAACACCTA
GTGATCTCATTTAGTTAGATGTCTTAGGAACACTTTGAAGATAGTAACTT
CAAACCTCACCAAAATCCTGTGTGACTGCTGTTAAAAATAAATGAGCTAT
GTCTCTTGGAGAAGCCCTTGTTCGTATGGCTTGTCTTTCCTTCTGAGTGG
TTTTCTCATCCTTATACTCAAACTCTGTATTAAAAATACCATTTTAAAAA
ACTAACTCTGCTTCATAGATGAGTTTTTGAAACTCTATTCTATATAAAAG
CCACAAGTCCTTGCTTGGTCTAAGGCAGGGTCTTTAGAAATCTAGGGGAA
TTCCTCAGGCAGCTCCACCTCCTGCCTCTGTTTCCCAAAATATGGATGCA
ATGAGCACCTACTATATGAAGTATTGAAGTACTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_c24.g1 MSMg01no542_c24.g1 CHROMAT_FILE:
MSMg01no542_c24.g1 PHD_FILE: MSMg01no542_c24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:08 2005
         (648 letters)



>mm_chr11_105506361_105507412
          Length = 1052

 Score = 1234 bits (638), Expect = 0.0
 Identities = 647/652 (99%), Gaps = 4/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaattaacagcatttgctgtgaaggttgctggtttgaaaagaaaattcatttataaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaattaacagcatttgctgtgaaggttgctggtttgaaaagaaaattcatttataaaga 260

                                                                       
Query: 61  gatctcttcaagtagcaactagtcaggtgtaagggttgtgttataccacccgagagacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctcttcaagtagcaactagtcaggtgtaagggttgtgttataccacccgagagacct 320

                                                                       
Query: 121 cattcctttcccaagttatttcccgggaagctcaaacaagactgttaactctgtttacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcctttcccaagttatttcccgggaagctcaaacaagactgttaactctgtttacag 380

                                                                       
Query: 181 tgaggatactttaacttccctgatatctagacttttactttgtcaattgtagtcttggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggatactttaacttccctgatatctagacttttactttgtcaattgtagtcttggtg 440

                                                                       
Query: 241 ggtgtccctcaggaaacacctagtgatctcatttagttagatgtcttaggaacactttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgtccctcaggaaacacctagtgatctcatttagttagatgtcttaggaacactttga 500

                                                                       
Query: 301 agatagtaacttcaaacctcaccaaaatcctgtgtgactgctgttaaaaataaatgagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatagtaacttcaaacctcaccaaaatcctgtgtgactgctgttaaaaataaatgagct 560

                                                                       
Query: 361 atgtctcttggagaagcccttgttcgtatggcttgtctttccttctgagtggttttctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtctcttggagaagcccttgttcgtatggcttgtctttccttctgagtggttttctca 620

                                                                       
Query: 421 tccttatactcaaactctgtattaaaaataccattttaaaaaactaactctgcttcatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccttatactcaaactctgtattaaaaataccattttaaaaaactaactctgcttcatag 680

                                                                       
Query: 481 at----gagtttttgaaactctattctatataaaagccacaagtccttgcttggtctaag 536
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagatgagtttttgaaactctattctatataaaagccacaagtccttgcttggtctaag 740

                                                                       
Query: 537 gcagggtctttagaaatctaggggaattcctcaggcagctccacctcctgcctctgtttc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcagggtctttagaaatctaggggaattcctcaggcagctccacctcctgcctctgtttc 800

                                                               
Query: 597 ccaaaatatggatgcaatgagcacctactatatgaagtattgaagtactgag 648
           |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccaaaacatggatgcaatgagcacctactatatgaagtattgaagtactgag 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1052
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1042
Effective search space:   664796
Effective search space used:   664796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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