BAC Information

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BAC

Clone NameMSMg01-542H05
Chromosome11 (Build37)
Map Location 4,411,166 - 4,411,621
singlet/doubletsinglet
Overlap geneMtmr3
Upstream geneSelm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
Downstream geneLOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542H05.T7 (MSMg01no542_h05.b1)MSMg01-542H05.TJ (MSMg01no542_h05.g1)
ACCAG608222AG608223
length782773
length of high quality
(start - end)		627 (44 - 670)607 (75 - 681)
definitionCHROMAT_FILE: MSMg01no542_h05.b1 PHD_FILE: MSMg01no542_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:29 2005CHROMAT_FILE: MSMg01no542_h05.g1 PHD_FILE: MSMg01no542_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAGGGAGATACTTACTCTTGGAGCCTTACTCACTCTAAAAGAGGAG
AAAAGTCAGTGTCAAGCCACACAAGGTAAATCACTTGAACGTGATTAAGT
TCACTCCTACATTAGTAGTGACTGCTGGACAGAATATGGCAAAACTAATG
TAGACTGTGCTGTGAGGTTGTAACTACTCAGGGCAACCAGCCACACTAAA
TGGATGAGATGACAAGGCAGGGAAAGGTTGAATATAAAGAAAAAGACCAG
GCTGGTGAGATGGCTCAGCGATTAAGAGCGCCAACTGCTCTTCCAAAGGT
CCTGAGTTCAAATCCCAGCAACCAGATGGTGGCTCACAACCACCCGTAAT
GAAATCTGATGCTCTCTTCTGGAGTATATGAAGACAGCTACAGTGTACTT
ACATATAATTAATAAAAAAAATAAATAAATACTAAAAAAAAAAAGAAAAA
GACAAGTGGCTAAGCTATGGATGGGAAAAGAAAATAGGAGATTTAGAAAA
AAAAATAAAAGTAACAATAAAACAAAAAAGATATCCTGCTTGTGAGAATG
TTTTTTAGAAATTAGATGAGGGAGATGGAGAGATGGTTCACGGGTTTAAA
GCACTTGTTGCTCTTGCAGAAGACTCAGGTTCAGTTCCCAGCATTTACAT
GGTGGCTCACAATCCTCTGTAACTATAATCCCAGCGATCTGATTCCTTTT
ATTGTCTTCTGAGGGCAGCTTGACCCAGAAGA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGGATATAGAATTACTAAAAGT
CAAAGTGGAAAAAAAATCAAAGTGAAAAACTTAGGAAGCCAAGCAAAAGC
CTTGTAGGTAATCCTCACCAATAGATTAAAAGACATGGGGAAAAAATTCA
GGTATTGAAGACAAAGAAGAAGAAATGTGTTTTTCAGTTAAAAAAATATT
AAATGTAAAAAAAAAATCAGGCACAAAATATCCAAGAAATATGGGACACT
ATGAAAAGACTAAACCTGTGGGTTAATAGAGAAAGAAGAAACCCAGGTCA
AAAATCAATCAATCAATCAATCAATCAATCTATCTATCTATCTATCTATA
CACATATGCACACATATATTTTAAATAAAAGCATAGAATAAAATTTTTCC
AATCTAAAAAGATACTCGGAAAGATAAAAAAAGATTTAGAGAACACCAAA
TAGAACCATAAACAAAATTACCCACAACACATAATAATCAAAACACTAAA
AGTACAAAGCAAAGAGATGATTTTAAATAGGAAAAAGGCCAAGTCACTAT
AAAAGCAAGCCCATTAGAGCAACATTTGACTTTTTATTTATTTGTTTGTT
TGTTTGTTTGTTTTTTTAGATTTATTTATTTATTTATATGTAAGTACACT
GTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTTGTTACAGAT
GGTTGTGAGCCACCATGTGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_h05.b1 MSMg01no542_h05.b1 CHROMAT_FILE:
MSMg01no542_h05.b1 PHD_FILE: MSMg01no542_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:29 2005
         (627 letters)



>mm_chr11_4411166_4412192
          Length = 1027

 Score =  837 bits (433), Expect = 0.0
 Identities = 449/457 (98%), Gaps = 6/457 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagggagatacttactcttggagccttactcactctaaaagaggagaaaagtc 64
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattcttagcgagaaacttactcttggagccttactcactctaaaagaggagaaaagtc 397

                                                                       
Query: 65  agtgtcaagccacacaaggtaaatcacttgaacgtgattaagttcactcctacattagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agtgtcaagccacacaaggtaaatcacttgaacgtgattaagttcactcctacattagta 337

                                                                       
Query: 125 gtgactgctggacagaatatggcaaaactaatgtagactgtgctgtgaggttgtaactac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtgactgctggacagaatatggcaaaactaatgtagactgtgctgtgaggttgtaactac 277

                                                                       
Query: 185 tcagggcaaccagccacactaaatggatgagatgacaaggcagggaaaggttgaatataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcagggcaaccagccacactaaatggatgagatgacaaggcagggaaaggttgaatataa 217

                                                                       
Query: 245 agaaaaagaccaggctggtgagatggctcagcgattaagagcgccaactgctcttccaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agaaaaagaccaggctggtgagatggctcagcgattaagagcgccaactgctcttccaaa 157

                                                                       
Query: 305 ggtcctgagttcaaatcccagcaaccagatggtggctcacaaccacccgtaatgaaatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ggtcctgagttcaaatcccagcaaccagatggtggctcacaaccacccgtaatgaaatct 97

                                                                       
Query: 365 gatgctctcttctggagtatatgaagacagctacagtgtacttacatataattaataaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  gatgctctcttctggagtatatgaagacagctacagtgtacttacatataattaataaaa 37

                                                
Query: 425 a-----aaataaataaatactaaaaaaaaaaagaaaa 456
           |     ||||||||||||||| |||||||||||||||
Sbjct: 36  ataaataaataaataaatact-aaaaaaaaaagaaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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