Query= MSMg01no542_m11.b1 MSMg01no542_m11.b1 CHROMAT_FILE:
MSMg01no542_m11.b1 PHD_FILE: MSMg01no542_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:55 2005
(709 letters)
>mm_chr11_47065868_47066976
Length = 1109
Score = 1332 bits (689), Expect = 0.0
Identities = 703/711 (98%), Gaps = 6/711 (0%)
Strand = Plus / Plus
Query: 5 gaattcattgtagtataacaatttagctatgtaatcttgcaagggtctgtgaaattatta 64
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtagtaaaacaatttagctgtgtaatcttgcaagggtctgtgaaattatta 264
Query: 65 ctaccatctataagagtagtctcaagttttagcaattttttatcataaggaaatctctaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaccatctataagagtagtctcaagttttagcaattttttatcataaggaaatctctaa 324
Query: 125 gaaggtgggaaaagttacacatatagaagtttacatccttcctaagatagatccattccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaggtgggaaaagttacacatatagaagtttacatccttcctaagatagatccattccc 384
Query: 185 tctgatggtccatcacagctatttctttcaaaaccactatgtaaaacttaagatcatttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgatggtccatcacagctatttctttcaaaaccactatgtaaaacttaagatcatttc 444
Query: 245 attttcttctttattatctcctccaccgaaatgacagtatggtgatttagactgtcccgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attttcttctttattatctcctccaccgaaatgacagtatggtgatttagactgtcccgc 504
Query: 305 ctgaggatttatcccagatacagtcaccaaactccagcactattgtggatgctaagaaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgaggatttatcccagatacagtcaccaaactccagcactattgtggatgctaagaaat 564
Query: 365 gcttgctgagaggagcctgatatagctgtttcttgagaggccctgccagatccttacaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttgctgagaggagcctgatatagctgtttcttgagaggccctgccagatccttacaaa 624
Query: 425 tacagagtcagatgctcggatgctagcagccaaacattgcactgagtgtgggatccccaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tacagagtcagatgctcggatgctagcagccaaacattgcactgagtgtgggatccccaa 684
Query: 485 tggaggagttagagaaaggactgaaggagctgaaggggtttgcaaccacataggaaaaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggaggagttagagaaaggactgaaggagctgaaggggtttgcaaccacataggaaaaaa 744
Query: 545 caataatgtcaaccagccagactc------cccccccccagagctcccagggactaagcc 598
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 caataatgtcaaccagccagactctccccccccccccccagagctcccagggactaagcc 804
Query: 599 accaaccaaggagtacacatggctccagctgcatatgtagcagaggacgaccttgtcagg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 accaaccaaggagtacacatggctccagctgcatatgtagcagaggacgaccttgtcagg 864
Query: 659 catcaatgggaggagaggtccttgggcctatcaagacttgatgccccagta 709
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 catcaatgggaggagaggtccttgggcctatcaagacttgatgccccagta 915
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_m11.g1 MSMg01no542_m11.g1 CHROMAT_FILE:
MSMg01no542_m11.g1 PHD_FILE: MSMg01no542_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:55 2005
(680 letters)
>mm_chr11_47268619_47269698
Length = 1080
Score = 1268 bits (656), Expect = 0.0
Identities = 675/682 (98%), Gaps = 2/682 (0%)
Strand = Plus / Minus
Query: 1 tgggttactattgatacattgcactgaagacttaaagctcctttccaggttggagtggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgggttactattgatacattgcactgaagacttaaagctcctttccaggttggagtggag 745
Query: 61 aaaatggatgctgatggtacccaggggtatgtgagtgggaaggaggctgactaagagatg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaaatggatgctgatggcacccaggggtatgtgagtgggaaggaggctgactaagagatg 685
Query: 121 agatggctagcctgagcttcaaggagctctcatctttgtgatcagaggaagatgggcctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agatggctagcctgagcttcaaggagctctcatctttgtgatcagaggaagatgggcctt 625
Query: 181 tggtggcattaagtagggctagagaatctggacgacagtagcagagtgacgtcatatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggtggcattaagtagggctagagaatctggacgacagtagcagagtgacgtcatatgag 565
Query: 241 cagagaggagacattaagagggtagcagcaggcataatgaacagagaaaaatctgcttgc 300
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 564 cagagaggagacattaatagggtagcagcaggcataatgagcagagaaaaatctgcttgc 505
Query: 301 tcagcatcaaatcaattacagtttcaatcagaacaggtgcaagttggattgcaatattga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagcatcaaatcaattacagtttcaatcagaacaggtgcaagttggattgcaatattga 445
Query: 361 tcttgggtgtgagctttctgcctcctttcataagcttgtatgttaaaaaaacaataggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 tcttgggtgtgagctttctgcctcctttcataagcttgtatgttaaaaaaaaaataggta 385
Query: 421 atgacaaatgcaaagcttcggacctgacttcagacagctttaattcaagtcatagggtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgacaaatgcaaagcttcggacctgacttcagacagctttaattcaagtcatagggtga 325
Query: 481 ctagttactacacctatgactttttagacaagttactttttgtggtgtgtgtgtgtcctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctagttactacacctatgactttttagacaagttactttttgtggtgtgtgtgtgtcctt 265
Query: 541 actcaggcatttgtgaagaaaatttcctaaaataatttctttctaaagttattgtaaaaa 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actcaggcatttgtaaagaaaatttcctaaaataatttctttctaaagttattgtaaaaa 205
Query: 601 aaactatataacatacattatatatatgcatatgtaac--atatatatatacatacatat 658
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 aaactatataacatacattatatatatgcatatgtaacatatatatatatacatacatat 145
Query: 659 atatgtatatatgtatgtatat 680
||||||||||||||||||||||
Sbjct: 144 atatgtatatatgtatgtatat 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
