BAC Information

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BAC

Clone NameMSMg01-543D18
Chromosome11 (Build37)
Map Location 56,515,070 - 56,734,477
singlet/doubletdoublet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543D18.T7 (MSMg01no543_d18.b1)MSMg01-543D18.TJ (MSMg01no543_d18.g1)
ACCAG608819AG608820
length782771
length of high quality
(start - end)		272 (46 - 317)629 (76 - 704)
definitionCHROMAT_FILE: MSMg01no543_d18.b1 PHD_FILE: MSMg01no543_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:32 2005CHROMAT_FILE: MSMg01no543_d18.g1 PHD_FILE: MSMg01no543_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,734,210 - 56,734,477)(56,515,070 - 56,515,698)
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCACTGCTTTACATGGCTCTTTGACATAAACACAAGACACTACC
ACCAAGTCAGAAATCAGTGTCTTTTCTGTTCTGGATGGTTTTGTCCCTCA
GTTTTCTCTCCTGGTGCTCCAGGAGGGACACACTAGGTCTTCACCTATCT
CAGGAGTCTGCATGTCTTGCTCGATGCCCTGTTGTCCTCGACACTGTGAT
AAGGTTGAGTGGTAAATATAGCTTTTAAAAAAAAGAACAAATACGTATTT
GATCAAATATGTTCAATGGGAATGGCAAAGAAAAATAAAGTTCCCATATG
GAATACCTTTTCCCCCCTTTGGGATCCCCCGGGGCAAAATAAGGGAAAAA
TTCCCCCCAAAAAAGAAAAAGGGGGAAAAGGGGGTTTTTGGGAAAAAAAA
AAAAAAGGGGAGACTTTTTTTTGTTTTTTTTATAACCACCCCCGTTATTC
CCTTTAAAAAAGAAACAAATACCAAAATTTTTTTTTCCCCTTAAAAAAAG
ATAAACCTACTTTTTCTCTCCCCCCCGGGGGGGGGGGACACTTTTTAGAA
AGAAATTTTTTTTTTTATAAAAAAATAAAGAGGGGGGGTGCCCCCCCCTT
TGGGTGGTTGGTGGGGCGGCCCCCCCACCCCCCTTAAAAAAATATTTTTT
TTCTTTCTTGGTAGAGAAGAAAATTTTTTCTCCCTTCTCTCTTAGAAAGA
AAAAACTTCTTTTTTCCTCCTCCTCACCGGGG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAATAGACAGACACATTGCCATAT
TAGGGAGATAGTAAAACTAGAATCCAAACCTGACTCTTCAATATCCTGAT
GCCACTGCATGCCAGCAAGTATACAGTGTTTACAGGAGATCATGATTTCA
GTGAAGTCAAATAAGGTTTCATAAATTCAACAGATATTGATTGGCATAGA
AAAAGTCTCAGACATAGAATTTCAAATAGTTATTTCAAAGAGACACAAAG
AGCTTGAAGAAAACACAGAAATTTTTCAGCACTCCAACAGAGACACTTAA
CAAAGACAAGCAAGGAATTAAAAAGAAACCAGGCAGATATTTTTTTGGAT
GGTGAAAACAGTGAAGCTAAAATGTCATCTTACCCAGCTGTGAACACTGT
AAACTATAATAATTGCCAGCCTAGCAAGATATGCCCATTGGTGCGATAGT
GACACAGGCATTATTGGGGTAACCAACTGCTTTTCTGTGTAAGTCTTACT
CCACAAGATGAAACCTATACCTAGTATCATTGGCCATGAACTTGTAGCTA
GACAGGCCATAGACCTTGTGATAGAATCTAGTATTCTACTAAGTGGTCAT
GGTATTAAACCCATTTACAATGACTTATCAGTATACTCATAATTTAACGA
CCATTATCAGAGAAGTTTCTATTTGCAGTAGATGGTGATTATTACAGAGA
CCTACTGCTGGCCAAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_d18.b1 MSMg01no543_d18.b1 CHROMAT_FILE:
MSMg01no543_d18.b1 PHD_FILE: MSMg01no543_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:32 2005
         (272 letters)



>mm_chr11_56734006_56734677
          Length = 672

 Score =  487 bits (252), Expect = e-142
 Identities = 264/268 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcactgctttacatggctctttgacataaacacaagacactaccaccaagtca 64
           |||||||||||||||  ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 472 gaattcagcactgctaaacatggctccttgacataaacacaagacactaccgccaagtca 413

                                                                       
Query: 65  gaaatcagtgtcttttctgttctggatggttttgtccctcagttttctctcctggtgctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaaatcagtgtcttttctgttctggatggttttgtccctcagttttctctcctggtgctc 353

                                                                       
Query: 125 caggagggacacactaggtcttcacctatctcaggagtctgcatgtcttgctcgatgccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caggagggacacactaggtcttcacctatctcaggagtctgcatgtcttgctcgatgccc 293

                                                                       
Query: 185 tgttgtcctcgacactgtgataaggttgagtggtaaatatagcttttaaaaaaaagaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgttgtcctcgacactgtgataaggttgagtggtaaatatagcttttaaaaaaaagaaca 233

                                       
Query: 245 aatacgtatttgatcaaatatgttcaat 272
           ||||||||||||||||||||||||||||
Sbjct: 232 aatacgtatttgatcaaatatgttcaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no543_d18.g1 MSMg01no543_d18.g1 CHROMAT_FILE:
MSMg01no543_d18.g1 PHD_FILE: MSMg01no543_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:32 2005
         (629 letters)



>mm_chr11_56514870_56515898
          Length = 1029

 Score = 1178 bits (609), Expect = 0.0
 Identities = 624/629 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaatagacagacacattgccatattagggagatagtaaaactagaatccaaacctgact 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tgaatagacagacacattgccatattagggagatagtaagactagaatccaaacctgact 260

                                                                       
Query: 61  cttcaatatcctgatgccactgcatgccagcaagtatacagtgtttacaggagatcatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaatatcctgatgccactgcatgccagcaagtatacagtgtttacaggagatcatga 320

                                                                       
Query: 121 tttcagtgaagtcaaataaggtttcataaattcaacagatattgattggcatagaaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcagtgaagtcaaataaggtttcataaattcaacagatattgattggcatagaaaaag 380

                                                                       
Query: 181 tctcagacatagaatttcaaatagttatttcaaagagacacaaagagcttgaagaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcagacatagaatttcaaatagttatttcaaagagacacaaagagcttgaagaaaaca 440

                                                                       
Query: 241 cagaaatttttcagcactccaacagagacacttaacaaagacaagcaaggaattaaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaatttttcagcactccaacagagacacttaacaaagacaagcaaggaattaaaaag 500

                                                                       
Query: 301 aaaccaggcagatatttttttggatggtgaaaacagtgaagctaaaatgtcatcttaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaccaggcagatatttttttggatggtgaaaacagtgaagctaaaatgtcatcttaccc 560

                                                                       
Query: 361 agctgtgaacactgtaaactataataattgccagcctagcaagatatgcccattggtgcg 420
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctgtgagcactgtaaattataataattgccagcctagcaagatatgcccattggtgcg 620

                                                                       
Query: 421 atagtgacacaggcattattggggtaaccaactgcttttctgtgtaagtcttactccaca 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 atagtgacacaggcattattggggtaaccaactgcttttctgtataagtcttactccaca 680

                                                                       
Query: 481 agatgaaacctatacctagtatcattggccatgaacttgtagctagacaggccatagacc 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 agatgaaacctatacctagtatcattggccaagaacttgtagctagacaggccatagacc 740

                                                                       
Query: 541 ttgtgatagaatctagtattctactaagtggtcatggtattaaacccatttacaatgact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtgatagaatctagtattctactaagtggtcatggtattaaacccatttacaatgact 800

                                        
Query: 601 tatcagtatactcataatttaacgaccat 629
           |||||||||||||||||||||||||||||
Sbjct: 801 tatcagtatactcataatttaacgaccat 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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