BAC Information

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BAC

Clone NameMSMg01-544C17
Chromosome11 (Build37)
Map Location 87,018,924 - 87,019,523
singlet/doubletsinglet
Overlap geneTrim37
Upstream geneInts2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik
Downstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544C17.T7 (MSMg01no544_c17.b1)MSMg01-544C17.TJ (MSMg01no544_c17.g1)
ACCAG609531AG609532
length739746
length of high quality
(start - end)		603 (50 - 652)435 (79 - 513)
definitionCHROMAT_FILE: MSMg01no544_c17.b1 PHD_FILE: MSMg01no544_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:44 2005CHROMAT_FILE: MSMg01no544_c17.g1 PHD_FILE: MSMg01no544_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAGCCAGTCTGTATTTGTTTCAAATTCAACATTGATTATA
TTTTGATCCACTCAAACACAATTTCCAGTTGTTTAAATTAGAACAGCTGT
TCTCAACCTCTGGGTATTTACATTACAATACATAACAGTAGCAAAATTAC
ATATATGAAGTCGTAATAAAATAACTTCATGGTTGAGGGTCATGACAACA
TAAGGTTGAGAACCACTGGATAGGAGGGTTTGTATTTTTGTTTACACTTC
GTCTTAATTGATACAACTTTTTAAAGACAAGGTCATAGTTAATCTTATTA
AGACTCTGTTTCAGAAGCAACAAAACAGAATTATTTTTGTCGTAGAGTAG
TAAATAAGCTGTCAGGGTCACAGAGTGCCCTGTTGTTTTGAACATGTAGG
CAGAAAAATATCTGTATATGGTAAAGATTAGACCTTTCTTTCGCTGTATA
GTGAGTTTTGTGACATTTACCATATTCAGAAATATGAATATATTTTTCCT
AAATATTTTTCAGCCACAAATAAGAAGAATTCCCCCAAGTCAGCTCGGGC
CATAGCAGGCAGTCTGTCACTCCGAAGAGCTGTGGACTCTGGAGAAAATA
GCCGTTCAAAGGGAGACTGTCAGGTTCTGGCTGAAGGTAAAGCTGACGAA
TTATAGTCTAATTTTATTGGGCCTGTGCTTGGGAATTGA

NNGACAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCGGGCTGGTGT
CGAACTCAGAGCCTCCAGAGTGCGCGCACACCATACTTTGCTGACCTTGA
TTTCTCAATCACCCTGTCTTCATTCAAGTGCTGGGATCCAGGCTTGTGCT
ACCATAGTCAGCCTGTTTTATTATCATCATCATCATTATTGGATTTTTTT
GAAACAAGGTTTCTTTGTGTAGCCTGGCTGTCCTGAAACAGTGGCATATG
CATGTAATACTAGTATTCAGGTAATGATTATGTAAAATCACTGGCTAAGT
ACTTTCCAAAAGCAAGCCTGTGAAGGGCTGGGGAGACGGTTCAGTGGTTA
AGAGCACTGAGTACTCTTCAGAGGACCTGAGGTGGATTTCTAACACCCAC
ATGACAGCTCACAGACATCTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTT
GAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTA
GACCAGGCTGGCCTCCAACTCAAAAATCCACCTGCCTCTGCCTCCCAAGT
GCTGGGATTAAAGGCGTGCGCCACCACCGCCCGGGTTTTTTTTACCCTTT
TTTTCTTTTTTTCTTTTTTTCCCAAGAAATCTTTTAATCTGGGTCCAAGA
GATCCTTGCCCTTTTTGGCCTTCTCAGGTATTAAGGCATGAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_c17.b1 MSMg01no544_c17.b1 CHROMAT_FILE:
MSMg01no544_c17.b1 PHD_FILE: MSMg01no544_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:44 2005
         (603 letters)



>mm_chr11_87018720_87019722
          Length = 1003

 Score = 1137 bits (588), Expect = 0.0
 Identities = 597/600 (99%), Gaps = 1/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagccagtctgtatttgtttcaaattcaacattgattatattttgatccactc 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggagccagtctgtatttgtttcaaattcaacattgattatattttgatccactc 264

                                                                       
Query: 65  aaacacaatttccagttgtttaaattagaacagctgttctcaacctctgggtatttacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacacaatttccagttgtttaaattagaacagctgttctcaacctctgggtatttacat 324

                                                                       
Query: 125 tacaatacataacagtagcaaaattacatatatgaagtcgtaataaaataacttcatggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacaatacataacagtagcaaaattacatatatgaagtcgtaataaaataacttcatggt 384

                                                                       
Query: 185 tgagggtcatgacaacataaggttgagaaccactggataggagggtttgtatttttgttt 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggggtcatgacaacataaggttgagaaccactggataggagggtttgtatttttgttt 444

                                                                       
Query: 245 acacttcgtcttaattgatacaactttttaaagacaaggtcatagttaatcttattaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacttcgtcttaattgatacaactttttaaagacaaggtcatagttaatcttattaaga 504

                                                                       
Query: 305 ctctgtttcagaagcaacaaaacagaattatttttgtcgtagagtagtaaataagctgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctgtttcagaagcaacaaaacagaattatttttgtcgtagagtagtaaataagctgtc 564

                                                                       
Query: 365 agggtcacagagtgccctgttgttttgaacat-gtaggcagaaaaatatctgtatatggt 423
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 agggtcacagagtgccctgttgttttgaacattgtaggcagaaaaatatctgtatatggt 624

                                                                       
Query: 424 aaagattagacctttctttcgctgtatagtgagttttgtgacatttaccatattcagaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagattagacctttctttcgctgtatagtgagttttgtgacatttaccatattcagaaa 684

                                                                       
Query: 484 tatgaatatatttttcctaaatatttttcagccacaaataagaagaattcccccaagtca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgaatatatttttcctaaatatttttcagccacaaataagaagaattcccccaagtca 744

                                                                       
Query: 544 gctcgggccatagcaggcagtctgtcactccgaagagctgtggactctggagaaaatagc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctcgggccatagcaggcagtctgtcactccgaagagctgtggactctggagaaaatagc 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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