Query= MSMg01no544_f20.b1 MSMg01no544_f20.b1 CHROMAT_FILE:
MSMg01no544_f20.b1 PHD_FILE: MSMg01no544_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:00 2005
(567 letters)
>mm_chr11_57781911_57782878
Length = 968
Score = 1075 bits (556), Expect = 0.0
Identities = 565/568 (99%), Gaps = 1/568 (0%)
Strand = Plus / Plus
Query: 1 gaattctttcaagtt-acaagtactgagggatcccatagtgatgtgacacatggctttat 59
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctttcaagtagacaagtactgagggatcccatagtgatgtgacacatggctttat 260
Query: 60 cttcttttcctccagacttggctcactcttcatcttataaaacaaaatgtcctagtcagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcttttcctccagacttggctcactcttcatcttataaaacaaaatgtcctagtcagt 320
Query: 120 gttctattgctgttaagagacaccacaaccaaagcaactatactaaatgaaagcatttca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctattgctgttaagagacaccacaaccaaagcaactatactaaatgaaagcatttca 380
Query: 180 ttggagctgacttacagttcagagatttagtccattatcatcatggcagaaagcatggca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggagctgacttacagttcagagatttagtccattatcatcatggcagaaagcatggca 440
Query: 240 gcatgcaggcagacatggtgctagagaaggagctactgccaggtcttcaggcagcaggaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatgcaggcagacatggtgctagagaaggagctactgccaggtcttcaggcagcaggaa 500
Query: 300 gggaagacacgtgacctggcttgagcttttaaaatctcaaagcccacccccagagatgta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaagacacgtgacctggcttgagcttttaaaatctcaaagcccacccccagagatgta 560
Query: 360 ctttcttcaacaaggccacacccactaatattctcaagtatctccgctccctaatgatca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcttcaacaaggccacacccactaatattctcaagtatctccgctccctaatgatca 620
Query: 420 cagatttaaatatatgacctttggagagcatgctattcaaaccaccacacaaagtctgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagatttaaatatatgacctttggagagcatgctattcaaaccaccacacaaagtctgcc 680
Query: 480 taccatgtacaaagccttgggttgcatcttcaccgctacataaaacaagtatagtgttac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccatgtacaaagccttgggttgcatcttcaccgctacataaaacaagtatagtgttac 740
Query: 540 atacctgtaataccagaactcggaagga 567
|||||||||||||||||||| |||||||
Sbjct: 741 atacctgtaataccagaacttggaagga 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_f20.g1 MSMg01no544_f20.g1 CHROMAT_FILE:
MSMg01no544_f20.g1 PHD_FILE: MSMg01no544_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:00 2005
(372 letters)
>mm_chr11_57919390_57920161
Length = 772
Score = 681 bits (352), Expect = 0.0
Identities = 367/372 (98%)
Strand = Plus / Minus
Query: 1 aagaagaagaagaagaaagattgttccagatcagcctcggctttggactctatcatcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 572 aagaagaagaagaagaaagattgttccagatcagcctcggctttggactctatcatcagg 513
Query: 61 cagatccacaagggatccttcccaggcatatgagagagaccatataaagcacatttaact 120
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 512 cagatccacaaggaatccttcccaggcatatgagagagaccatataatgcacatttaact 453
Query: 121 gagcaaaggaacttcctgggcatgctggccacagggaagagagaacacagcaattcaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gagcaaaggaacttcctgggcatgctggccacagggaagagagaacacagcaattcaaca 393
Query: 181 cagactaacgccctccctcctctttccacccaagaagctcaggctccaagataccttctc 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cagactaacgccctccctccactttccacccaagaagctcaggctccaagataccttctc 333
Query: 241 ttcatcaccctctcgttcccatacctcagaattctgttttcaagtacagttattcgtgta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 332 ttcatcaccctctcgttcccatacctcagaattctgttttcaagtacagttatttgtgta 273
Query: 301 acaacagcccctggggtaacctcattactgaggtttcaaccagaagaacaataatgaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acaacagcccctggggtaacctcattactgaggtttcaaccagaagaacaataatgaatt 213
Query: 361 tcacaactcaaa 372
||||||||||||
Sbjct: 212 tcacaactcaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
