Query= MSMg01no544_h24.b1 MSMg01no544_h24.b1 CHROMAT_FILE:
MSMg01no544_h24.b1 PHD_FILE: MSMg01no544_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:11 2005
(624 letters)
>mm_chr11_22486153_22487176
Length = 1024
Score = 1170 bits (605), Expect = 0.0
Identities = 616/621 (99%), Gaps = 4/621 (0%)
Strand = Plus / Minus
Query: 6 ggaattcctagtcttatcc--cttcaggttgcttacagggctggcctcagaactttaaga 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ggaattcctagtctta--cagcttcaggttgcttacagggctggcctcagaactttaaga 767
Query: 64 tctcagctattacagtgaggatcatgcacgctatgtggaatgcaggtatgtgttcttagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tctcagctattacagtgaggatcatgcacgctatgtggaatgcaggtatgtgttcttagc 707
Query: 124 actgagccttagcccagaattgcaaagaaagtcaaccttttcagacctgccttctccatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 actgagccttagcccagaattgcaaagaaagtcaaccttttcagacctgccttctccatc 647
Query: 184 aaaaggtcgttaggcaaaacgggcatcatcatgctatgccaggccctaactacttaaaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aaaaggtcgttaggcaaaacgggcatcatcatgctatgccaggccctaactacttaaaca 587
Query: 244 ggatccccttggtgggctgagatgctaccaccaagttccctttctggatgaaaaaccaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggatccccttggtgggctgagatgctaccaccaagttccctttctggatgaaaaaccaaa 527
Query: 304 cactggcttgcctcacagccagacccaggtagcagactccaggttctgcctgaacacgga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cactggcttgcctcacagccagacccaggtagcagactccaggttctgcctgaacacgga 467
Query: 364 cctaccaagttgcaaatatagtagagttggcagcacgggcaatagacaaccttcaatcct 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 466 cctaccaagttgcaaatatagtagagctggcagcacgggcaatagacaaccttcaatcct 407
Query: 424 gagagttccagaaggatgtctccctacacagcactagggacagcatgtcagagaaccagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagagttccagaaggatgtctccctacacagcactagggacagcatgtcagagaaccagt 347
Query: 484 ccaactccaccccgtccccaccgggccagctgctgggagtgtcacggccttctgagggtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccaactccaccccgtccccaccgggccagctgctgggagtgtcacggccttctgagggtc 287
Query: 544 ttttgctgactagacatctgcctcatacctatcctagcacacattgggcacacccatacc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttttgctgactagacatctgcctcatacctatcctagcacacattgggcacacccatacc 227
Query: 604 ttgtgatggtgcatggtgatg 624
|||||||||||||||||||||
Sbjct: 226 ttgtgatggtgcatggtgatg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_h24.g1 MSMg01no544_h24.g1 CHROMAT_FILE:
MSMg01no544_h24.g1 PHD_FILE: MSMg01no544_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:11 2005
(640 letters)
>mm_chr11_22352027_22353066
Length = 1040
Score = 1197 bits (619), Expect = 0.0
Identities = 634/639 (99%)
Strand = Plus / Plus
Query: 1 ccagctgcttggaaatgaatgctttccttttttgagttttcacacaaattatgcagatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagctgcttggaaatgaatgctttccttttttgagttttcacacaaattatgcagatgc 260
Query: 61 aactacatatacagaacaaacaggatttggagcataggtatcttgaccactgttgagaat 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactacatatccagaacaaacaggatttggagcataggtatcttgaccactgttgagaat 320
Query: 121 acacagacattttggatctggtgtgctattgcctggtaaaacttgaccttcaaccttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacagacattttggatctggtgtgctattgcctggtaaaacttgaccttcaaccttcaa 380
Query: 181 cctttgaccttcagagctgagatgttatcctaggcccaatgacaatggattctggatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttgaccttcagagctgagatgttatcctaggcccaatgacaatggattctggatgct 440
Query: 241 tttctaccttttaaaactgtgtatctgcaactggagaagagaagctaaatcacaggacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctaccttttaaaactgtgtatctgcaactggagaagagaagctaaatcacaggacac 500
Query: 301 tggtgtggttgggcctcatgggcagcaccatcctaggctcatggataccttcaagtagaa 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tggtgtggttgggcctcatgggcagcaccatcctaggctcatgaataccttcaagtagaa 560
Query: 361 ctcaacatttctcatttctagagaagaaattcactttctctaaaacatcaaaaagaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaacatttctcatttctagagaagaaattcactttctctaaaacatcaaaaagaaaca 620
Query: 421 tggatttttactgtagatttcatagagagatacaggcaaggtttagatcaaggtcctcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggatttttactgtagatttcatagagagatacaggcaaggtttagatcaaggtcctcat 680
Query: 481 gccaaacttttgtagaaattaaaatctgggacctccacaaaaagttccctcagtgtcgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 gccaaacttttgtagaaattaaaatctgggacctccacaaaaagttccctcagtgtcaat 740
Query: 541 cctgtccacacaaaggttctttctctgattctctggatcttacgtattctcactctgacc 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgtccacacaaagggtctttctctgattctctggatcttacgtattctcactctgacc 800
Query: 601 ctgtcttccttcagcaccttctgcaaccaatctctcaat 639
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 ctgtcttccttcagcaccttctgcaatcaatctctcaat 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
