BAC Information

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BAC

Clone NameMSMg01-544O21
Chromosome11 (Build37)
Map Location 120,853,815 - 121,007,924
singlet/doubletdoublet
Overlap geneCd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19
Upstream geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d
Downstream geneUts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544O21.T7 (MSMg01no544_o21.b1)MSMg01-544O21.TJ (MSMg01no544_o21.g1)
ACCAG610113AG610114
length748746
length of high quality
(start - end)		592 (52 - 643)549 (80 - 628)
definitionCHROMAT_FILE: MSMg01no544_o21.b1 PHD_FILE: MSMg01no544_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:46 2005CHROMAT_FILE: MSMg01no544_o21.g1 PHD_FILE: MSMg01no544_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(120,853,815 - 120,854,402)(121,007,376 - 121,007,924)
sequence
NGGCGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGTATAATTTTCTTTCTGTTGATGAACAATACCTAACT
TCATCTGAGAAGCCCCTATATTGAACTGAAAACAGCAAACCTGGTATCTG
GCCTAACCTCTCTCTTACCAACCTCGGGCCTGATCTTTGCCTAGCGGTCT
TCCCTCTGGGAGCACCTGCTCTGTCTGGAATAGAGAGCCGAGGGTGTGAG
CTGCTGCGTGCCTAGGGCTCTGCACACCCTTCTTATTACTTGTATACAGG
ACAGTCAGCTGATAAAGTGACCAAAGTTCTTGCTGCGTTTTACTTACTCG
ATGGTCAGAAGGAGGCAGTGCACGGAAGAGGCCCCAGGCAGGATCAATGC
TCTGGGTTTTGAAGGTCATTTGCAAGTGTCCTGTGCTGGGGTTCTTGGCT
TCTCATCACAGTCCCTTGCTGCAGAATGTGTGTGCCAAAGCCATCGCCAT
CCCCTGGGCATGCCGGGCAGAGATTGCACTGACTGAGATCATGGTGGCTC
TTCACCACGGGCACCTCTGAAGTTTAGGTTCTTTCTGTACTTACACAATC
TACCCTCTCACAACGCTGCTAGTAATTTGAACACTCTTGAGAGGGGGCCA
AGTGTTAGGCCTGTAGACCCTTCTCCTGCAGTAACAATGCCCACGCAAAG
GCCTACACAGGTGGTTTTAGCAAAAATGCTGTGTTTCTGCTGGGAAAN

TGAGGGCGATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAATACCTCTCTGGAGAA
GTAGAAAGGCTTGAGCTTCCAGAAACTTCTTCAGCTTCACACTTGCTCCA
ATATATGGGGAGCTAGAAAGACAGAGAAAATGAGGTTTGGCTCACCCTGC
TGGGCCCGCTGCAGGGCTCCCCTGAGGAGAGGGTGTTGGGGCTCTGGCCC
CCGGGGTTCCCTGTTCACTCTGGACAGGCTGGGGTGACATCAGAGGTGTC
CTCAGGGCTCAAGGCCCCGACCTCACACTTGCGCCCGGCTACCAACCAAA
GAGGCCGGGAAGCCTACGCCAGGAGGATCTCCTCTCTGCCCACCGTGCTC
CCACCCGACCCAGGCCCACCGCACCCAGCCCGGCTTAGCCCCCGGCCCAG
TCCCTTTCCATCCTTACCTCCCTGACTGAGCGCCCAGGTGCCAGCTAATG
GACCCCAAAGCCAGGCTCTCCTCGCTAAGCACTGAACACCAGGGAGGACG
AACGCGGCCTTATAAAGGGCCAAGTCCCGCGATGCTCCAGCTCATTTACA
TATCTCCCATGAGGTCCCAAAGCAGCAGGAAGCGAAGGTGCTGAGTCACT
CTGGCCCTGAGTCACTCTGGCTCTGAAGGCGCACATGCGGCCTGGCGCCC
CCTACAGCGCGCATGCGCTGCTCCCTTGCGCCACTGAGTGCCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_o21.b1 MSMg01no544_o21.b1 CHROMAT_FILE:
MSMg01no544_o21.b1 PHD_FILE: MSMg01no544_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:46 2005
         (592 letters)



>mm_chr11_120853611_120854602
          Length = 992

 Score = 1122 bits (580), Expect = 0.0
 Identities = 586/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtataattttctttctgttgatgaacaatacctaacttcatctgagaagccc 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtataattttttttctgttgatgaacaatacctaacttcatctgagaagccc 264

                                                                       
Query: 65  ctatattgaactgaaaacagcaaacctggtatctggcctaacctctctcttaccaacctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctatattgaactgaaaacagcaaacctggtatctggcctaacctctctcttaccaacctc 324

                                                                       
Query: 125 gggcctgatctttgcctagcggtcttccctctgggagcacctgctctgtctggaatagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggcctgatctttgcctagcggtcttccctctgggagcacctgctctgtctggaatagag 384

                                                                       
Query: 185 agccgagggtgtgagctgctgcgtgcctagggctctgcacacccttcttattacttgtat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccgagggtgtgagctgctgcgtgcctagggctctgcacacccttcttattacttgtat 444

                                                                       
Query: 245 acaggacagtcagctgataaagtgaccaaagttcttgctgcgttttacttactcgatggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaggacagtcagctgataaagtgaccaaagttcttgctgcgttttacttactcgatggt 504

                                                                       
Query: 305 cagaaggaggcagtgcacggaagaggccccaggcaggatcaatgctctgggttttgaagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaaggaggcagtgcacggaagaggccccaggcaggatcaatgctctgggttttgaagg 564

                                                                       
Query: 365 tcatttgcaagtgtcctgtgctggggttcttggcttctcatcacagtcccttgctgcaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatttgcaagtgtcctgtgctggggttcttggcttctcatcacagtcccttgctgcaga 624

                                                                       
Query: 425 atgtgtgtgccaaagccatcgccatcccctgggcatgccgggcagagattgcactgactg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgtgtgccaaagccatcgccatcccctgggcatgccgggcagagattgcactgactg 684

                                                                       
Query: 485 agatcatggtggctcttcaccacgggcacctctgaagtttaggttctttctgtacttaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 agatcatggtggctcttcaccacgggcacctctgaagtttaggttctttctatacttaca 744

                                                           
Query: 545 caatctaccctctcacaacgctgctagtaatttgaacactcttgagag 592
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caatctaccctctcacaacgctgctagtaatttgaacactcttgagag 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no544_o21.g1 MSMg01no544_o21.g1 CHROMAT_FILE:
MSMg01no544_o21.g1 PHD_FILE: MSMg01no544_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:46 2005
         (549 letters)



>mm_chr11_121007176_121008124
          Length = 949

 Score = 1023 bits (529), Expect = 0.0
 Identities = 544/549 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgaatacctctctggagaagtagaaaggcttgagcttccagaaacttcttcagcttca 60
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 749 aatgaatacctctctgaagaagtagacaggcttgagcttccagaaacttcttcagcttca 690

                                                                       
Query: 61  cacttgctccaatatatggggagctagaaagacagagaaaatgaggtttggctcaccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cacttgctccaatatatggggagctagaaagacagagaaaatgaggtttggctcaccctg 630

                                                                       
Query: 121 ctgggcccgctgcagggctcccctgaggagagggtgttggggctctggcccccggggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctgggcccgctgcagggctcccctgaggagagggtgttggggctctggcccccggggttc 570

                                                                       
Query: 181 cctgttcactctggacaggctggggtgacatcagaggtgtcctcagggctcaaggccccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cctgttcactctggacaggctggggtgacatcagaggtgtcctcagggctcaaggccccg 510

                                                                       
Query: 241 acctcacacttgcgcccggctaccaaccaaagaggccgggaagcctacgccaggaggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acctcacacttgcgcccggctaccaaccaaagaggccgggaagcctacgccaggaggatc 450

                                                                       
Query: 301 tcctctctgcccaccgtgctcccacccgacccaggcccaccgcacccagcccggcttagc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 449 tcctctctgcccaccgtgctcccacccgacccaggcccaccgcacccagcccggctcagc 390

                                                                       
Query: 361 ccccggcccagtccctttccatccttacctccctgactgagcgcccaggtgccagctaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccccggcccagtccctttccatccttacctccctgactgagcgcccaggtgccagctaat 330

                                                                       
Query: 421 ggaccccaaagccaggctctcctcgctaagcactgaacaccagggaggacgaacgcggcc 480
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggactccagagccaggctctcctcgctaagcactgaacaccagggaggacgaacgcggcc 270

                                                                       
Query: 481 ttataaagggccaagtcccgcgatgctccagctcatttacatatctcccatgaggtccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttataaagggccaagtcccgcgatgctccagctcatttacatatctcccatgaggtccca 210

                    
Query: 541 aagcagcag 549
           |||||||||
Sbjct: 209 aagcagcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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