BAC Information

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BAC

Clone NameMSMg01-545C02
Chromosome11 (Build37)
Map Location 121,007,925 - 121,008,441
singlet/doubletsinglet
Overlap geneTex19
Upstream gene1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik
Downstream geneUts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545C02.T7 (MSMg01no545_c02.b1)MSMg01-545C02.TJ (MSMg01no545_c02.g1)
ACCAG610266AG610267
length733718
length of high quality
(start - end)
524 (34 - 557)98 (159 - 256)
definitionCHROMAT_FILE: MSMg01no545_c02.b1 PHD_FILE: MSMg01no545_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:01 2005CHROMAT_FILE: MSMg01no545_c02.g1 PHD_FILE: MSMg01no545_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCCT
TTTCTGGTACCACTGCCCCGTGTCCTGGAGCCCCAAAGCCCCTAGACCTA
CTGTGCCCTGTTTTCTCCCGTTTCTCTCATTCTCGCCTTTCCCACTTATT
TCTAGCCTCTGTGGTTCTGTTGACCTGACCTCCTCAGTCCATCGAGCAAG
TCTGAATCTGTGTGTCCGCTTAGCTGCAGACAGACTTCTTGACCATGTGT
CCCCCAGTCAGCGTTCGCCATGGGGCCAGGGGCATGTCCTGCCTCTATGG
GGCATGGCTGTACCATCTTGTCCATGGGGAACAGACGAAGATCTGCTTTG
CTTGCTTCAAGGCAGCTTTCCTATTGAATAAACTCTACCTGGAGATGGGA
GACTGGCAAGAGGAAGAAGAGGAGGAAGAGGAAGAGGAAGATGCTGATCT
CCTGGAATACTTGTCAGAGTCAGAGTCAGATTCTGAGCAGGAGCCAGGGC
CTGAGCAGGATGCATGGCGGGGATTGGGGTCCCTTTATGTGCCACAGAGT
GTCTCTGAAGGGTCTGGGGTCCTGCTGCCAACCCCTGTGTGGACACAGGG
CATACTATTCTTCATTTTTGTGCCCACTGAGCTCTTTCCTCANGAAGCTG
TACCCCTGGATCTTGGTCCTGAAGATGCTGAGTGGACCCAGGCCCTTCCC
TGGAGACTTGAGGGGCTTTTTTCCTGCTCGCAN
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCNTTGAGCCTTCATCATTCCTAAATGC
TGTCTTAAATNAAAGAAATTCATAGGTCTATTAANGAAATACTGNNTGAG
TGCNNGCAAAAATATTTGCACTTTNTGCTAGCATGACCAATGTTAAAATG
GAAATACTTGTGCACAAAGACTTACAGACTTGGCTTTGTTTTTTGTTTTT
GTAATCAGGAATCTGTAATTGCTGGGTCTGAAAGTTCTCAATACCCATCT
ATACATTATTTACACAATTTGTTTTTATTATTTATGGCCAAGCTGTCTGG
AAACTTGCCTGTGAAAACAAAGCTTATCTCCATTTCTAAAACCTTCGGGT
TTCTGCCTCCTTGAGGGTTGAAATTAAAAGGATTAAAGGTGGGGTGCCCC
CTCCACGGGGCCCCCCAGGAAGGGTTTTAAAAAATTGAAGGCCCCCTCCC
TTGTTTTCTCTTAACCCCCACAAAAAAGAACCACCAAACGTGGGAAACAA
AAATTTTTTTTTTAAAATTTTTTTTCCCCAAGGGAACCCCCACCCCCAAA
AAACAAAAATACCCCCCCTCGCTTTTTTTTGAAAAAAAAAAGGCTTTGTT
TTTTTAACCCACCCCCCCCTTTTTCTCTTTTTTTAAAAAAAAAAAATTTT
TTTTTTGTGCGTGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_c02.b1 MSMg01no545_c02.b1 CHROMAT_FILE:
MSMg01no545_c02.b1 PHD_FILE: MSMg01no545_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:01 2005
         (524 letters)



>mm_chr11_121007721_121008644
          Length = 924

 Score =  951 bits (492), Expect = 0.0
 Identities = 512/520 (98%), Gaps = 3/520 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacccttttctggtaccactgccccgtgtcctggagccccaaagcccctagac 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacccagttctggtaccactgccccgtgtcctggagccccaaagcccctagac 264

                                                                       
Query: 65  ctactgtgccctgttttctcccgtttctctcattctcgcctttcccacttatttctagcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctactgtgccctgttttctcccgtttctctcattctcgcctttcccacttatttctagcc 324

                                                                       
Query: 125 tctgtggttctgttgacctgacctcctcagtccatcgagcaagtctgaatctgtgtgtcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgtggttctgttgacctgacctcctcagtccatcgagcaagtctgaatctgtgtgtcc 384

                                                                       
Query: 185 gcttagctgcagacagacttcttgaccatgtgtcccccagtcagcgttcgccatggggcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttagctgcagacagacttcttgaccatgtgtcccccagtcagcgttcgccatggggcc 444

                                                                       
Query: 245 aggggcatgtcctgcctctatggggcatggctgtaccatcttgtccatggggaacagacg 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggggcatgtcctgcctctatgaggcatggctgtaccatcttgtccatggggaacagacg 504

                                                                       
Query: 305 aagatctgctttgcttgcttcaaggcagctttcctattgaataaactctacctggagatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagatctgctttgcttgcttcaaggcagctttcctattgaataaactctacctggagatg 564

                                                                       
Query: 365 ggagactggcaagaggaagaagaggaggaagaggaagaggaagatgctgatctcctggaa 424
           ||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||||
Sbjct: 565 ggagactggcaagaggaggaagagga---agaggaagaggaagatgctgatctcctggaa 621

                                                                       
Query: 425 tacttgtcagagtcagagtcagattctgagcaggagccagggcctgagcaggatgcatgg 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 622 tacttgtcagagtcagagtcagagtctgagcaggagccagggcctgagcaggatgcatgg 681

                                                   
Query: 485 cggggattggggtccctttatgtgccacagagtgtctctg 524
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cggggattggggtccctttatgtgccacagagtgtctctg 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)