Query= MSMg01no545_e17.b1 MSMg01no545_e17.b1 CHROMAT_FILE:
MSMg01no545_e17.b1 PHD_FILE: MSMg01no545_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:13 2005
(282 letters)
>mm_chr11_17400811_17401492
Length = 682
Score = 422 bits (218), Expect = e-122
Identities = 272/312 (87%), Gaps = 35/312 (11%)
Strand = Plus / Minus
Query: 4 ggaattccagagcaaggattcctggaaagatgaattattctagtgtctctggtgcccgtc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 420 ggaattccagagcaaggattcctggaaagatgaattattctagtgtctctggtgctcgtc 361
Query: 64 tttaaattgtaaaagtgttttcaattttgtaaggtgagtttcctcttcttgggcaagttt 123
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 360 tttaaattgtaaaagtgttttcaattttgtaaggtgagtttcctcttcctgggcaagttt 301
Query: 124 ttctcctccaaaatggttgcatttgtaaacaaggtagtagaatacacagttcatttggtg 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttctcctccaaaatagttgcatttgtaaacaaggtagtagaatacacagttcatttggtg 241
Query: 184 aatctgctatgtagaagcatgtacacacacacacac------------------------ 219
||||||||||||||||||||||||||||||||||||
Sbjct: 240 aatctgctatgtagaagcatgtacacacacacacacacacacacacacacacacacacac 181
Query: 220 ----------atagagggggaaagggaaggagaaggagggaagaagggagggaatggagg 269
| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 180 acacacacaaacagagggggaaagggaaggagaaggagggaagaagggaggg-atggagg 122
Query: 270 gagggcgagagg 281
||||| ||||||
Sbjct: 121 gagggagagagg 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no545_e17.g1 MSMg01no545_e17.g1 CHROMAT_FILE:
MSMg01no545_e17.g1 PHD_FILE: MSMg01no545_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:13 2005
(618 letters)
>mm_chr11_17353409_17354426
Length = 1018
Score = 1149 bits (594), Expect = 0.0
Identities = 612/618 (99%)
Strand = Plus / Plus
Query: 1 aaggacaggcaccgggcacagctagcattgtgaagtgaacgatacacacatgaaagacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggacaggcaccgggcacagctagcattgtgaagtgaacgatacacacatgaaagacat 260
Query: 61 tctttggaagtttttgagggtaaggaggaggaggcaggtcagagaaggtggaagcccctt 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 261 tctttggaagtttttgagggtaaggaggaggaggcaggtcagacaaggtggaagtccctt 320
Query: 121 gaagaaaccctctcatgttcccaagtcccaagatcctcctaaatcagactcaggtcacat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaaatcctctcatgttcccaagtcccaagatcctcctaaatcagactcaggtcacat 380
Query: 181 ggagcctagacttgtctcctggcccagggtgaaaacagttcacgttgtaaaattaacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagcctagacttgtctcctggcccagggtgaaaacagttcacgttgtaaaattaacttt 440
Query: 241 ccacatttggccagcccacacgtgccaactttctttcaaaatgagtttgcgaatgaatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacatttggccagcccacacgtgccaactttctttcaaaatgagtttgcgaatgaatga 500
Query: 301 atgaatgaacgtgttgactgggttactgttcttaggggagccttctttgccttggacttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaatgaacgtgttgactgggttactgttcttaggggagccttctttgccttggacttg 560
Query: 361 gagaaggattaaagttggttttgaagagcgctggtgctctcccaaacacagcaggctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaaggattaaagttggttttgaagagcgctggtgctctcccaaacacagcaggctgat 620
Query: 421 agaattctggttgcacttttatttgctatggaacaaaatgttgtcgtttcatggaagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaattctggttgcacttttatttgctatggaacaaaatgttgtcgtttcatggaagaaa 680
Query: 481 tagcctagcagatggtgtttggtggatggcttgaatgtagatttgtaaataagctactga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 tagcctagcagatggtgtttggtggatggcttgaatgtagatttgtaaataagcttctga 740
Query: 541 aaatagactagcctcccccaaacttaccatcagccccttaccccatgaggtctacaggtg 600
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatagactagcttccccaaaacttaccatcagccccttaccccatgaggtctacaggtg 800
Query: 601 ataaaagaaagaaaagaa 618
||||||||||||||||||
Sbjct: 801 ataaaagaaagaaaagaa 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
