Query= MSMg01no547_b19.b1 MSMg01no547_b19.b1 CHROMAT_FILE:
MSMg01no547_b19.b1 PHD_FILE: MSMg01no547_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:38 2005
(671 letters)
>mm_chr11_93586624_93587694
Length = 1071
Score = 1253 bits (648), Expect = 0.0
Identities = 663/668 (99%)
Strand = Plus / Plus
Query: 4 ggaattctgtgtggacattttgctagtggattagttaaatgcaattagcatctggggcag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgtggacattttgctagtggattagttaaatgcaattagcatctggggcag 263
Query: 64 aaaggcactctgggaaagagactgagctaggtgcattttgggtggattggaagagttaag 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 aaaggcactctgggaaagagactgagctaggtgcattttgggcggattggaagagttaag 323
Query: 124 ctttggctatggtgcttaagggagctgatgctgcaactctccttgggggttctgctctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttggctatggtgcttaagggagctgatgctgcaactctccttgggggttctgctctcc 383
Query: 184 ctggtgagatgagattttgcagagcagtctagaaccccctacatcaggccacacacaata 243
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggtgagatgagattttggagagcagtctagaaccccctacatcaggccacacacaata 443
Query: 244 caagctcactgcttcttggtcttacaccacctttccacttcctgccttccttgccaacca 303
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caagctcactgcttcttggccttacaccacctttccacttcctgccttccttgccaacca 503
Query: 304 ttcggcacagaatgtaataaaaggaggtgaacgtcatattcattggtagacaaccagttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcggcacagaatgtaataaaaggaggtgaacgtcatattcattggtagacaaccagttg 563
Query: 364 cttaagaaaccaagttgtatcattataggagattcctatgcaaaccttcaaaaattagga 423
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 cttaagaaaccaagttgtatcattataggagattcctacgcaaaccttcaaaaattagga 623
Query: 424 aggaagtcaggttccaaactgggaagtaaaatgggctgcatagaccaggcaagacaaata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggaagtcaggttccaaactgggaagtaaaatgggctgcatagaccaggcaagacaaata 683
Query: 484 acagaaaataatgtgtgggctaaaagaactgattttttttctttttcttttgccagaagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acagaaaataatgtgtgggctaaaagaactgattttttttctttttcttttgccagaagt 743
Query: 544 aagatgaagaagtctgaagctaggaagcaagataagaaacagcatacagctcagtggcag 603
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 744 aagatgaagaagtctgaagctaggaagcaagataagaaacagcgtacagctcagtggcag 803
Query: 604 agaatttacccaatgtgtgagactctaaatttgatccccagcatggaagactttgtaatg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agaatttacccaatgtgtgagactctaaatttgatccccagcatggaagactttgtaatg 863
Query: 664 ctgaagag 671
||||||||
Sbjct: 864 ctgaagag 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_b19.g1 MSMg01no547_b19.g1 CHROMAT_FILE:
MSMg01no547_b19.g1 PHD_FILE: MSMg01no547_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:39 2005
(684 letters)
>mm_chr11_93814560_93815642
Length = 1083
Score = 1243 bits (643), Expect = 0.0
Identities = 672/683 (98%), Gaps = 4/683 (0%)
Strand = Plus / Minus
Query: 1 aggccaaccatggctgtacagactcttgtctcaaaaacaagacagagaaagcgttcttgg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 808 aggccaaccatggctgtacagactc---tctcaaaaacaagacagagaaagcgttcttgg 752
Query: 61 ggttggagagaggactcagcagttgagtatttattgttgagatcaggagtttggttccca 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 751 ggttggagagaggactcagcagttgagtatttattgctgagatcaggagtttggttccca 692
Query: 121 gtacttagggtggctcacagccctctctaatttcagttccaggggacctgacgtcttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtacttagggtggctcacagccctctctaatttcagttccaggggacctgacgtcttctg 632
Query: 181 gcctctgggcaccaggcacaaatgcaggcaaaccacccatacacataaatctttaaatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 631 gcctctgggcaccaggcacaaatgcaggcaaaccacccatacacataaatccttaaatct 572
Query: 241 aaagtttgtcatctgaaatgtttaaaaggttctgttgagcaggggaacctgggttcctga 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 571 aaagtttgtcatctgaaatgtttaaaaggttctgttgagca-gggaacctgggttactga 513
Query: 301 cacattcagtcaatattgcactttccacttctatagtgttagatccttaacatcactgac 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacattcagtcaatattgtactttccacttctatagtgttagatccttaacatcactgac 453
Query: 361 tatgtaagagtctttatttcttttggtttttctagactgggtttctctgtagccctggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatgtaagagtctttatttcttttggtttttctagactgggtttctctgtagccctggct 393
Query: 421 ttcttggaacttgctctatagaccaagctatccttgaaatcagatccatctatctctgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttcttggaacttgctctatagaccaagctatccttgaaatcagatccatctatctctgcc 333
Query: 481 ttccaagtgctgggatcaaaggggtgcgccaccactggctcttattttttaagacaaggt 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 332 ttccaagtgctgggatcaaaggggtgcaccaccactggctcttattttttaagacaaggt 273
Query: 541 ttctatcccaggttggccttgaacttggggttaccccctctgtctaccaagtgctgggat 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 272 ttctatcccaggttggccttgaacttggggttaccccctttgtctaccaagtgctgggat 213
Query: 601 tgcaggcatgagctatcagctcattttgtaaacacttgcaatttttgtcttgtgcacggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tgcaggcatgagctatcagctcattttgtaaacacttgcaatttttgtcttgtgcacggt 153
Query: 661 gtgtttgtgtgcgagcactggtc 683
||||||||||||||||| |||||
Sbjct: 152 gtgtttgtgtgcgagcattggtc 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
