Query= MSMg01no547_b24.b1 MSMg01no547_b24.b1 CHROMAT_FILE:
MSMg01no547_b24.b1 PHD_FILE: MSMg01no547_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:40 2005
(662 letters)
>mm_chr11_86649469_86650530
Length = 1062
Score = 1154 bits (597), Expect = 0.0
Identities = 642/657 (97%), Gaps = 3/657 (0%)
Strand = Plus / Plus
Query: 4 ggaatt-actgtgtagccttggatagccttgaattcactatgtaagccaggctggcctca 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcactgtgtagccttggatagccttgaattcactatgtaagccaggctggcctca 262
Query: 63 cactctcagagatccacctgcctttgcctccttagctgccactatattctttgaggcagg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactctcagagatccacctgcctttgcctccttagctgccactatattctttgaggcagg 322
Query: 123 gtcactggccactgaagtttccagatctgcatgcaggagcgcctggcttttgcatttaat 182
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 323 gtcactggccactgaagtttccagatctgcatgcaggagcgcctggatattgcatttaat 382
Query: 183 gaagactttaccaacagagctatctccccacccccagggccattccccctccactttctc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaagactttaccaacagagctatctccccacccccagggccattccccctccactttctc 442
Query: 243 agtcaggtcctagtctcggaattgtacaaaacccaggtgacaaagtataactaaacgtgg 302
||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 443 agtcaggtcctaggcttggaattgtacaaaacccaggtgacaacgtataactaaatgtgg 502
Query: 303 aagaaggagg-tgctccctgtttctctacagttgttgagcaactccttaagttgctgctt 361
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagaaggaggct-ctccctgtttctctacagttgttgagcaactccttaagttgctgctt 561
Query: 362 caggaatgctcttggcctaatggcaacaccctttctacaataggggcagaggtgagaggg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caggaatgctcttggcctaatggcaacaccctttctacaataggggcagaggtgagaggg 621
Query: 422 agctactgccctccagtggctcctatggtaactacatcagggactgcatagctcatgcag 481
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 622 agctactgccctccagtggctcctatggtaactacatcagggactgcattgctcaggcag 681
Query: 482 ggccatcaggaaagaccagggtagaacagagcagaggaaagtagatttgacgatcgaaag 541
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 682 ggccatcaggaaagaccagggtagaacagagcagaggaaagtagatttgactagcgaaag 741
Query: 542 aactagtaagatttcaggcattactgcaaatgtgacctagtaaactcagctctgtaaagg 601
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 742 aactagtaagatttcaggcattactgcaaatgtgacctaataaactcagctctgtaaagg 801
Query: 602 acagaaaaaatatagattatatgagctgtaggttttcaataattacatacttccttt 658
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 acagaaaaattatagattatatgagctgtaggttttcaataattacatacttccttt 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_b24.g1 MSMg01no547_b24.g1 CHROMAT_FILE:
MSMg01no547_b24.g1 PHD_FILE: MSMg01no547_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:40 2005
(645 letters)
>mm_chr11_86796789_86797833
Length = 1045
Score = 1216 bits (629), Expect = 0.0
Identities = 641/645 (99%)
Strand = Plus / Minus
Query: 1 aaggtgacctttggctacatttccctctgtgtggtcagccctcagttgtccacattgcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 664 aaggtgacctttggctacatttccctctgtgtggtcagccctcagttgtccacactgcct 605
Query: 61 taaacttatcctcctgccttagccttccaagcactggggcttcaggcatgtaccccaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taaacttatcctcctgccttagccttccaagcactggggcttcaggcatgtaccccaaac 545
Query: 121 ccaggcagactaaactttccaagtttgtacgccatgtcgagctttggggacgacccatga 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccaggcagactaaagtttccaagtttgtacgccatgtcgagctttggggacgacccatga 485
Query: 181 actagctttgggagctttttaaatggagaggctgagttggtcaagtgcatgtagatccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 actagctttgggagctttttaaatggagaggctgagttggtcaagtgcatgtagatccat 425
Query: 241 cctccaagcaccaggcctaaacggaaaagggttttaattctgaataaggcctatgtgctc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cctccaggcaccaggcctaaacggaaaagggttttaattctgaataaggcctatgtgctc 365
Query: 301 tttccacgtagagaagcccagaaattcgtcatggagtcagcctcttccccccctctgccc 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttcccacgtagagaagcccagaaattcgtcatggagtcagcctcttccccccctctgccc 305
Query: 361 ctctcctgcccctctacccccctttcccttgctctctttcctcttttttcccccccacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctctcctgcccctctacccccctttcccttgctctctttcctcttttttcccccccacac 245
Query: 421 cctagaatacaaatctatccatctgtgggctggctattacattgcagctcaggcatcctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cctagaatacaaatctatccatctgtgggctggctattacattgcagctcaggcatcctt 185
Query: 481 tcgataaatgtctcttccttttctcactcttaaattttaaaagttcaacttccagattcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tcgataaatgtctcttccttttctcactcttaaattttaaaagttcaacttccagattcc 125
Query: 541 agttgtggaaaggcagggggcttagccacagacaggctggatctagaatgtaggatttat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 agttgtggaaaggcagggggcttagccacagacaggctggatctagaatgtaggatttat 65
Query: 601 gtgaactggggataaaactgagaaagcgtgcagacagctgaacag 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gtgaactggggataaaactgagaaagcgtgcagacagctgaacag 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
