Query= MSMg01no547_c21.b1 MSMg01no547_c21.b1 CHROMAT_FILE:
MSMg01no547_c21.b1 PHD_FILE: MSMg01no547_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:44 2005
(653 letters)
>mm_chr11_61963732_61964784
Length = 1053
Score = 768 bits (397), Expect = 0.0
Identities = 424/433 (97%), Gaps = 2/433 (0%)
Strand = Plus / Minus
Query: 5 gaattctttattttatgggtctgtttctactttgatattaagcatgaaatgtatggttcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 433 gaattctttattttaggggtctgtttctactttgatattaagcatgaaatgtatgcttcc 374
Query: 65 cagtgatcctcattagtaaaattgtagaatataattttcaaaaaatgtttttgaagtcag 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagtgatcctcataagtaaaattgtagaatataattttcaaaaaatgtttttgaagtcag 314
Query: 125 catgtgaagcaaaagattcctaacaatttagccttatgaggaaacatctgagatttcacc 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 313 catgtgaagcaaaagattcctaacaatttagccttataaggaaacatctgagatttcacc 254
Query: 185 actaagtatgattactcgcactaaatcagattaaagaatttcccagagaggagctggaag 244
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acgaagtatgattactcgcactaaatcagattaaagaatttcccagagaggagctggaag 194
Query: 245 tatgattcaatggttaagaacagtggctactcttccaaagaaaccagattctattcatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tatgattcaatggttaagaacagtggctactcttccaaagaaaccagattctattcatag 134
Query: 305 cacccatatggcagcttg-taccacctgtaactctaggtacagaggatctgataatctct 363
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 cacccatatggcagcttgctaccacctgtaactctaggtacagaggatctgataatctct 74
Query: 364 tctggcctccaaaggcaattggcatgcccatggcacaaataatggatgcatgggtaaaa- 422
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 73 tctggcctccaaaggcagttggcatgcccatggcacaaataatggatgcatggttaaaac 14
Query: 423 catccattcacat 435
|||||||||||||
Sbjct: 13 catccattcacat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_c21.g1 MSMg01no547_c21.g1 CHROMAT_FILE:
MSMg01no547_c21.g1 PHD_FILE: MSMg01no547_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:44 2005
(659 letters)
>mm_chr11_61807377_61808436
Length = 1060
Score = 1197 bits (619), Expect = 0.0
Identities = 645/659 (97%), Gaps = 10/659 (1%)
Strand = Plus / Plus
Query: 1 ttgagaatgatggaaaaatggaaaaatggaagactatatataacagtattccattgacta 60
|||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 209 ttgagaatgatggaaaaatgta-------aagactatatataacagtattccattgacta 261
Query: 61 taattttatacctacatgtgtgaagaatgtgtgaataagtttgtttctttcaaacatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taattttatacctacatgtgtgaagaatgtgtgaataagtttgtttctttcaaacatcat 321
Query: 121 accacgtattatttattcgtattttaatgattaagacagagtctcagtatatagtgtatt 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 accacatattatttattcgtattttaatgattaagacagagtctcagtatatagtgtatt 381
Query: 181 agttacttttctgttgctttgataaaacaccacaaccaaaggaacttacagaaggaaggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agttacttttctgttgctttgataaaacaccacaaccaaaggaacttacagaaggaaggc 441
Query: 241 tttatttagcttatgattccagagggacgagtccacctcagcagggaagtaagcagcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 tttatttagcttatgattccagagggacgagtccacctcagcagggaagtaagtagcagg 501
Query: 301 caggctggctggagcagcagcagcggagagctcacatcttcaccacaaacaggaagcaga 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 502 caggctggctggagcagcagca---gagagctcacatcttcaccacaaacaggaagcaga 558
Query: 361 aatgtggtatttctgggatatgtcacttcagggatgtttgatctctggggcccagcaatt 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 aatgtggtatttctgggatatgtcacttcagggatgtttggtctctggggcccagcaatt 618
Query: 421 gggattatagcttctgagtttgtgcttcctcccacacaggctgtctatgcaggttgggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gggattatagcttctgagtttgtgcttcctcccacacaggctgtctatgcaggttgggta 678
Query: 481 gactcttatcgctgtgtcctttgggattcttgggtctactgctgtctggtagtggacagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gactcttatcgctgtgtcctttgggattcttgggtctactgctgtctggtagtggacagc 738
Query: 541 ctagttaataattgctcaggactcctcaccaacaaggcctgtgaggactggtttttgttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ctagttaataattgctcaggactcctcaccaacaaggcctgtgaggactggtttttgttt 798
Query: 601 ttttaattgtgtgtgagtatgtgtgtgtgtgtctgtctgtgtgtgtctgtgtgtttgtg 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttttaattgtgtgtgagtatgtgtgtgtgtgtctgtctgtgtgtgtctgtgtgtttgtg 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
