BAC Information

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BAC

Clone NameMSMg01-547J07
Chromosome11 (Build37)
Map Location 67,156,816 - 67,311,332
singlet/doubletdoublet
Overlap geneMyh13
Upstream geneGm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8
Downstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547J07.T7 (MSMg01no547_j07.b1)MSMg01-547J07.TJ (MSMg01no547_j07.g1)
ACCAG612134AG612135
length760759
length of high quality
(start - end)		644 (31 - 674)665 (52 - 716)
definitionCHROMAT_FILE: MSMg01no547_j07.b1 PHD_FILE: MSMg01no547_j07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:15 2005CHROMAT_FILE: MSMg01no547_j07.g1 PHD_FILE: MSMg01no547_j07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,156,816 - 67,157,454)(67,310,790 - 67,311,332)
sequence
GCCGCTATACGACTCCTATAGGTTCAGGATCCGCGGAATTCCCTGAGTAT
GTAATTTTTTTTGTACTTATCTGTTGTCAGTGACAAGAATATACACCTAG
GAATAAAAATGCAGGGTCACATGCTGTCCTTGAGTCTTTTCCAGTTGGTG
TTGTAGCCATGCAATAACTATGCTTATTTGTCTAAGAAAGGACTTCATAG
TTTAAGTTAGCCTAGAATTCAGTATATAGCCCAGCATGACCCAAACTTGT
GATCCTCCTGCCTCAAATCCCCATATGCTAGGATGTGGGAGTGTACTGCT
ACAGCCAGCCTCTGTGTCTAATCATTTGGGAAACTACAGAAGTTGTTCCC
CATATGGATACAGAAGAGCCTGTACCAACTTCCAAGGTTCCCAGTCCTTT
CATGCTCTCTTTACTAATAGATGTGGTACATTAAACAATTGTCCAAGACA
CAGTTTTAAAATATTGACCATTTAAGTACAAGCTTTTAGTAATTAATTTA
TTTAATTTAAAATGAATGCAAGATAATCATTCAGTAGATAATTACATAAC
AGTATAAGAGTTCATGTCTAGTTATACTTTGGGCTGAGAATTGTAATAAA
TGAGCACAATTTAAATTTGAATGACAAAATGATTTTCTTTGAGTCTGACC
AGGGTATCTCTAAGAGTCTCTTAGGGACAATGTTACTTAGCAACAATGCC
AAGACATTATTTGAGGGACCTATGGATGGAGATAGATCTGAAAAAGGGGC
TTTCTTGCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTGCAATTCACTCAGCATCCAAAAGGGGCAGCAGGATCCTAGCATTTCA
GGCTATAGATTAGAAGAGACTGTTGAATCAGCCAAGTGGGCTAAGGTCCT
TGCACACTGAACATAGAAACTATAGAAAATGAACTTGTGAAAACAGGGCT
GAGGAGGTAGCTCGGTTGCTAACGTCCTTGCCTAACATGCCCAAGGCACT
GGGTTCCATCCCCCGCAAAGCACAAAATCATATGTGCTGGTACACACCTG
AAATCTTACCATGCAGGAGGTAGATGCAGGAGGATCAAAAATCAATCTGT
GCTACATGATCCCCTGTCTCAAACACACCCACACATGAAATACACCTCTA
CCTTTCTTCTCCCAGACCTCATCTATCCCAAATTCATGTTTTATTGATCT
CTCCCAACTGTGTCTTACTTAGATCTCAAAGGATCTTATATTCTTGCTTA
TACTAATGTGTGATAGGCAAGGTTCAGCTAATGGCCCTGACAACAGATAA
CTAGTCTTCAAATGAAAGCTGGTGAAGCCAATGTCCTTGGCTCATTCCCT
GCTGCCATAGGAATCCATCAGAATCAAGGTTCCCCTTGGGTTTTCCCTTC
TCTGGTGATATTTTCTACTCCCTTCTTCATTCTACCCACTCCCCACAACA
GGGCCACCTTTCTTGTTCAGAGACAGCCTCTGCAATGATGTTGGAGGTTA
AACCCTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_j07.b1 MSMg01no547_j07.b1 CHROMAT_FILE:
MSMg01no547_j07.b1 PHD_FILE: MSMg01no547_j07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:15 2005
         (644 letters)



>mm_chr11_67156611_67157654
          Length = 1044

 Score = 1205 bits (623), Expect = 0.0
 Identities = 635/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccctgagtatgtaattttttttgtacttatctgttgtcagtgacaagaatataca 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccctgagtatgcaattttttttgtacttatctgttgtcagtgacaagaatataca 265

                                                                       
Query: 66  cctaggaataaaaatgcagggtcacatgctgtccttgagtcttttccagttggtgttgta 125
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 266 cctaggaataaaaatgcagggtcacatggtgtccttgagtcttttccagttggtgttata 325

                                                                       
Query: 126 gccatgcaataactatgcttatttgtctaagaaaggacttcatagtttaagttagcctag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gccatgcaataactatgcttatttgtctaagaaaggacttcatagtttaagttagcctag 385

                                                                       
Query: 186 aattcagtatatagcccagcatgacccaaacttgtgatcctcctgcctcaaatccccata 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aattcagtatatagcccagcatgacccaaacttgtgatcctcctgcctcaaatccccata 445

                                                                       
Query: 246 tgctaggatgtgggagtgtactgctacagccagcctctgtgtctaatcatttgggaaact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgctaggatgtgggagtgtactgctacagccagcctctgtgtctaatcatttgggaaact 505

                                                                       
Query: 306 acagaagttgttccccatatggatacagaagagcctgtaccaacttccaaggttcccagt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acagaagttgttccccatatggatacagaagagcctgtaccaacttccaaggttcccagt 565

                                                                       
Query: 366 cctttcatgctctctttactaatagatgtggtacattaaacaattgtccaagacacagtt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cctttcatgctctctttactaatagatgtggtacattaaacaattgtccaagacacagtt 625

                                                                       
Query: 426 ttaaaatattgaccatttaagtacaagcttttagtaattaatttatttaatttaaaatga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttaaaatattgaccatttaagtacaagcttttagtaattaatttatttaatttaaaatga 685

                                                                       
Query: 486 atgcaagataatcattcagtagataattacataacagtataagagttcatgtctagttat 545
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 686 atgcaagataatcattcagtagataattacataacagtataagagttaatgtctagttat 745

                                                                       
Query: 546 actttgggctgagaattgtaataaatgagcacaatttaaatttgaatgacaaaatgattt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 actttgggctgagaattgtaataaatgagcacaatttaaatttgaatgacaaaatgattt 805

                                                  
Query: 606 tctttgagtctgaccagggtatctctaagagtctcttag 644
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tctttgagtctgaccagggtatctctaagagtctcttag 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_j07.g1 MSMg01no547_j07.g1 CHROMAT_FILE:
MSMg01no547_j07.g1 PHD_FILE: MSMg01no547_j07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:15 2005
         (665 letters)



>mm_chr11_67310268_67311332
          Length = 1065

 Score = 1042 bits (539), Expect = 0.0
 Identities = 542/543 (99%)
 Strand = Plus / Minus

                                                                        
Query: 123  agaaaatgaacttgtgaaaacagggctgaggaggtagctcggttgctaacgtccttgcct 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 agaaaatgaacttgtgaaaacagggctgaggaggtagctcggttgctaacgtccttgcct 1006

                                                                        
Query: 183  aacatgcccaaggcactgggttccatcccccgcaaagcacaaaatcatatgtgctggtac 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aacatgcccaaggcactgggttccatcccccgcaaagcacaaaatcatatgtgctggtac 946

                                                                        
Query: 243  acacctgaaatcttaccatgcaggaggtagatgcaggaggatcaaaaatcaatctgtgct 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  acacctgaaatcttaccatgcaggaggtagatgcaggaggatcaaaaatcaatctgtgct 886

                                                                        
Query: 303  acatgatcccctgtctcaaacacacccacacatgaaatacacctctacctttcttctccc 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  acatgatcccctgtctcaaacacacccacacatgaaatacacctctacctttcttctccc 826

                                                                        
Query: 363  agacctcatctatcccaaattcatgttttattgatctctcccaactgtgtcttacttaga 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  agacctcatctatcccaaattcatgttttattgatctctcccaactgtgtcttacttaga 766

                                                                        
Query: 423  tctcaaaggatcttatattcttgcttatactaatgtgtgataggcaaggttcagctaatg 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  tctcaaaggatcttatattcttgcttatactaatgtgtgataggcaaggttcagctaatg 706

                                                                        
Query: 483  gccctgacaacagataactagtcttcaaatgaaagctggtgaagccaatgtccttggctc 542
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 705  gccctgacaacagataactagtcttcaaatgaaagctggtgaagccagtgtccttggctc 646

                                                                        
Query: 543  attccctgctgccataggaatccatcagaatcaaggttccccttgggttttcccttctct 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  attccctgctgccataggaatccatcagaatcaaggttccccttgggttttcccttctct 586

                                                                        
Query: 603  ggtgatattttctactcccttcttcattctacccactccccacaacagggccacctttct 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585  ggtgatattttctactcccttcttcattctacccactccccacaacagggccacctttct 526

               
Query: 663  tgt 665
            |||
Sbjct: 525  tgt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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