Query= MSMg01no547_n01.b1 MSMg01no547_n01.b1 CHROMAT_FILE:
MSMg01no547_n01.b1 PHD_FILE: MSMg01no547_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:33 2005
(652 letters)
>mm_chr11_85069982_85071033
Length = 1052
Score = 1166 bits (603), Expect = 0.0
Identities = 640/657 (97%), Gaps = 12/657 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggacagcctgggctacacagagaaaccctgtctcaaaaaaccaaaaaaaatt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 198 gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaccaaaaaaa-tt 256
Query: 65 aaaaaaa--------aaaaaaagagtacatattcaagtctcccttaaacactgcaaatgt 116
||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 257 aaaaaaacaaaaaaaaaaaaaagagtacatattcaggtctcccttaaacactgcaaatgt 316
Query: 117 ttcagctaaaagaatatggcagagaagaaaaaagttgagcaacaaagtaacatgtttaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcagctaaaagaatatggcagagaagaaaaaagttgagcaacaaagtaacatgtttaaa 376
Query: 177 tctcaatgcagtaacataggaaacatgaaaaaaaaaatcaagacactatatatatgccct 236
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 377 tctcaatacagtaacataggaaacatgaaaaaaaaa-tcaagacactatatatatgccct 435
Query: 237 taaaaaaatcaataaccctatagtaatggcatctagtgaaaatgagttacattaagtccc 296
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 436 taaaaaaatcaataaccctatagtaatggcatctagtgaaaattagttacattaagtccc 495
Query: 297 caaaagagaatttataatggttataagtatgtcaaagacacagagctgccc-aaaagaag 355
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 496 caaaagagaatttataatggttataagtatgtcaaagacacagagctgcccgaaaa-aag 554
Query: 356 gaaaatgatacatgatctggaagaggaattcaacaacataaaataatttcctctattctc 415
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaaaatgatacatgatctgaaagaggaattcaacaacataaaataatttcctctattctc 614
Query: 416 tctgatcgcaatggaatcagactacaaatcaatagcaagaaaagccctggaccacacaca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tctgatcgcaatggaatcagactacaaatcaatagcaagaaaagccctggaccacacaca 674
Query: 476 aactcatgagattaaacaacacactattcagcaatgagtggatccttgaaataataaaat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aactcatgagattaaacaacacactattcagcaatgagtggatccttgaaataataaaat 734
Query: 536 cactaaaaccaactaaaaataacaacacaccaagcagactctatggaacacaaatgcaaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cactaaaaccaactaaaaataacaacacaccaagcagactctatggaacacaaatgcaaa 794
Query: 596 cagtctaaaagaggagggtggtggttccagtcagtcaggggagtcagaaagaaagct 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cagtctaaaagaggagggtggtggttccagtcagtcaggggagtcagaaagaaagct 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_n01.g1 MSMg01no547_n01.g1 CHROMAT_FILE:
MSMg01no547_n01.g1 PHD_FILE: MSMg01no547_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:33 2005
(688 letters)
>mm_chr11_85240143_85241232
Length = 1090
Score = 1189 bits (615), Expect = 0.0
Identities = 666/691 (96%), Gaps = 15/691 (2%)
Strand = Plus / Minus
Query: 1 tctctactgttcctatcctgggattcaaatcagcgactatgtgccacgcctaatacatac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 971 tctctactgttcctatcctgggattcaaatcagcgactatgtgccacgcctaatgcatac 912
Query: 61 cagactgcagtgaaaactctgcctcacctaatcctcacctaatcagcatggtgcccctgg 120
||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 911 cagactgcagtgaaaactctg-----------cctcacctaatcagcatggtgcccctgg 863
Query: 121 atcactcccacggttcaagattacggatcccaagaacaagaactgacaagaactgctgct 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 862 atcactcccacggttcaagattacggatcccaagaacaaggactgacaagaactgctgct 803
Query: 181 cttcatctgcaatttacttctgaatcttttctctaaagtcttcacagtttccattattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cttcatctgcaatttacttctgaatcttttctctaaagtcttcacagtttccattattcc 743
Query: 241 tatacatttagccatagcatggagactaactataaagcatcaattttaggttaatcctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tatacatttagccatagcatggagactaactataaagcatcaattttaggttaatcctta 683
Query: 301 gtgaaaaaaactatagaacaaggaacaagcagaaatgaaacaagattcaccattgatggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtgaaaaaaactatagaacaaggaacaagcagaaatgaaacaagattcaccattgatggg 623
Query: 361 tcagcatcttgtgtcattacatccaagtttccttcaaaaacatctttattcaaatctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcagcatcttgtgtcattacatccaagtttccttcaaaaacatctttattcaaatctgag 563
Query: 421 ttcagtccctagaacttactttaaaaaaaaaaaaggagctgt---agcaacattcttaca 477
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct: 562 ttcagtccctagaacttacttt-aaaaaaaaaaaggagcagtagcagcaacattcttaca 504
Query: 478 gtgaaaccggaggcaaacatagaacttgtgagaagcttgctgaccagtacctcacaggcc 537
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtaaaacgggaggcaaacacagaacttgtgagaagcttgctgaccagtacctcacaggcc 444
Query: 538 acacagagtagaaaagacaagaaggggcctgtctcataggggagtggaggaaaggtgaca 597
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct: 443 acacagagtagaaaagacaagacggagcctgtctcaaaggggagtggaggaaaggtgaca 384
Query: 598 acaagaggtgtcatctgactcacacgcatacactgtggaatgcacctaaatatacatgca 657
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 acaagaggtgtcatctgactcacacgcatacactgtggcatgcacctaaatatacatgca 324
Query: 658 acatatatactaacaattaattagtgactta 688
|||||||||||||||||||||||||||||||
Sbjct: 323 acatatatactaacaattaattagtgactta 293
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1090
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1080
Effective search space: 732240
Effective search space used: 732240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
