GCTTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTATATATTGGATATTAGCCCTCTATCAGATGTAGGGTTGATA
AAGATCTTTTCCCAATATGGTGGTTGTCATTTTGTCTTATTGACAGTGTT
CTTTGCCTTGCAGAAGCTTTACTATTTTATAAGGTCCCATTTGTCAATTC
TTGATCTTAGAGCATAAGCTATTGGTGTTCAGGAAATTTTCCCCTGTGCC
CATGGGCTTGAGGTTCCTCCCACTTTCTTTTCTATTCGTTTCAGTGTCTC
TGGCTTTATGTGGAGGTCCTTGATCCACTTCCTAAATAGTTTTACCTCCA
CTTTAGTGTCATATACACTCACAATTTCATGCAATCTATACACTCCAGGA
ACTTCACAAAATGAAACATTAAGGATTTCTGATTCTGGCTCAGTTCACCT
AATGTTCTAGTTACATACAATTTTCTTCTGTAAACAAGATAATTTCATTA
TTTTGGAGAATTGAAAAATTCCCGTTATGTATGCATACTGCACTGTATTT
CCCTTCCATTTGTCTGGCATTAGATAACTAATTTTGAACTGCATTCTAGA
TATTTAAAAAGAGTGGTTTCAACATAAAACCTTAAAATTACAAGTTTTTT
CTTCTTTTATCTAAATATTGATATAGAATTTTTTTTTACGAAGACCCTCC
CCCTATAAATTTACTATAAATAAGTTCAATACGGAATGCTTCTTGTATTG
CTCCTCCAACGTG

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATCTCTGTACCACATTTT
AAAATAGGGTTATTTGATTTTTCTGGAGTCCAACTTCTTGAGTTCCTTAT
ATATATTAGATATTAGCTCCCTATTGGGTTTAGGGTTGGTAAAGATCTTT
TCCCAATCTGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCTTTGCCTT
ACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTTCATCTTA
CAGCACAAACCATTGGTGTTCTGTTCAGGAATTTCCCCCCTGTGCCCCCA
TCTTTGAGGCTCTTCCCCACTTTCTGTAAGTTTCAGTGTCTCTGGCTTTA
TTTGCAGTTCCTTGATCCATTTAGACTTGAGCTTTGTACACGGAGAGAAG
AATGGATCAATTTGAGTTCTCCTACACGATAACTGCCAGTTGAGCCAGCA
CCATTTGTTGAAAATGCTGTCTTTTTTCTACTGAATGGTTTTTGCTCCTT
TTTCAAAGATCAAGTGACTATAAGTGTGTGGGTTCATTTCTGAATCTTCA
ATTCTATTCCATTGATCTAACAAGGTAAGATTCTATTTAAGGGAGACCAT
GTGATATTTGTTTTTCTGCATGAAGTAATCTTTATTTAGTATTTGCATGT
GTGGTGTGTGGTTTGGGTCTTTTTTTATCTN

Query= MSMg01no548_e05.b1 MSMg01no548_e05.b1 CHROMAT_FILE:
MSMg01no548_e05.b1 PHD_FILE: MSMg01no548_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:08 2005
         (447 letters)



>mm_chr11_39853042_39853887
          Length = 846

 Score =  787 bits (407), Expect = 0.0
 Identities = 434/443 (97%), Gaps = 1/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtatatattggatattagccctctatcagatgtagggttgataaagatctt 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtatatattggatattagtcctctatcagatgtagggttgataaagatctt 264

                                                                       
Query: 65  ttcccaatatggtggttgtcattttgtcttattgacagtgttctttgccttgcagaagct 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcccaatatggtagttgtcattttgtcttattgacagtgttctttgccttgcagaagct 324

                                                                       
Query: 125 ttactattttataaggtcccatttgtcaattcttgatcttagagcataagctattggtgt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 ttactattttataaggtcccatttgtcaattcttgatcttagagcataaggtattggtgt 384

                                                                       
Query: 185 tcaggaaattttcccctgtgcccatgggcttgaggttcctcccactttcttttctattcg 244
           |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct: 385 tcaggaaattttcccctgtgcccatgggcttgagattcttcccactttcttttctatttg 444

                                                                       
Query: 245 tttcagtgtctctggctttatgtggaggtccttgatccacttcctaaatagttttacctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttcagtgtctctggctttatgtggaggtccttgatccacttcctaaatagttttacctc 504

                                                                       
Query: 305 cactttagtgtcatatacactcacaatttcatgcaatctatacactccaggaacttcaca 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 cactttagtgtcatatacactcacaatttcatacaatctatacactccaggaacttcaca 564

                                                                       
Query: 365 aaatgaaacattaaggatttctgattctggctcagttcacctaatgttctagttacatac 424
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatgaaacattt-ggatttctgattctggctcagttcacctaatgttctagttacatac 623

                                  
Query: 425 aattttcttctgtaaacaagata 447
           |||||||||||||||||||||||
Sbjct: 624 aattttcttctgtaaacaagata 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space:   365332
Effective search space used:   365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)