BAC Information

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BAC

Clone NameB6Ng01-001C16
Chromosome12 (Build37)
Map Location 30,224,058 - 30,225,238
singlet/doubletsinglet
Overlap geneMyt1l, LOC100043496
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
Downstream genePxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C16.bB6Ng01-001C16.g
ACCDH839564DH839565
length1,1761,172
definitionDH839564|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C16, 5' end.DH839565|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcctcctgctgctgccaaaggcttctgtagccaatggctcttca
gctggttgcacagtgtcaggacagctcatattgtacatgtaacagagatg
ctagatagcccagagatctgtctgtctgctggaaggctgacttcagttag
cagtagaggctttggccacaccccacccaaagctgttgttgttgacccct
gctacccacagccctgaaatgtccagaaacttagaagaagacatctgaca
ttcaccagtgtttactgtctcatattctcgaatgagaaaaggctggactc
tatacccaagtataaggaaatctgacattcaccaatgtttactgtctcat
attctcgaatgagaaaaggctggactctatacccaagtataagaaaccac
ggtaaagaagaccagctatccagaaccccccaaaatatctgaacttttat
ttctagcttgtaagagaagggcatatactaacatatgtaatccgtacaga
aacagttacacaatgctatgcaatcgtgctaatattcaggaagaccacca
gagtatttattacccagaaagaggaaacaaggggttcagcccactctgct
taagtcggaaaagcaaaaatctatttccaaatctattcaaggaaaagttg
ccctgcaggcattaccattaccttttgtcagcagatgggcagacagacag
ataaatacttaggtcctgactacctgcaggatggttccctctcttggctc
tgcacacagtaggagctcaagttgtgcacactgaaaggatattccatcag
aggcaaagggtggagggagaagctgactaagaagccacagtcttcatcat
tagtgttgactgtgccattgttgccaggagaaaaagctgaaattgagagg
gatgcccaccatggctgctgactgctggagatctatcattgaactttcct
aaaacacagaatctaaaaataattagcaaacttgcaccgagtttcagggg
ggaggagaacaaagacaggctcactgcaatcagctgatcagtcccactga
ctgagacatctccccacgtccctgtcttgagcttgagcagctctcctcga
ggtcatatgaaagccttaagcctctggcttagccttgggggctctcacgt
tcagtcttagcgtgctgaaatctgtt
gaattctcacctgaggaataccgaatggctgagaaatacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacatcagtcagaatgagtaagatcaaaaattcaggtgacagt
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcc
aaaaattgggcatggtactacaggcagatcctgcaaaacctctcctgggc
atatatccagaagatgttccaactagtaagaaagacacatgctccgctat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaattgtggtacatttacccagtg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcattatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagttacaatttgcaaaacacatgaaactcaa
gaagaacaaagaccaaagtgtggacactttggcccttcttagaattggga
acaaaacatccatggaaggagttacagagacaaagtttggagctgagata
aaaggatggaccatctagagactgccatatacagggatccatcccataat
cagcctccaaacgctgacaccattgcatacactagcaagatcttgctaaa
ggaccctgatatagctgtctcttatgagactatgccggggcctagcaaac
accagaagtggatgctcaagtcagctatgggatggatcacaggccctccc
aatggaggagctagagaaagtacccaaggagctaagggatctgccaccct
atagtgatcaacataatgaactatcagtctcggagtctttgttcctagct
gctatgatctaaagaaggcctaattggcccttactggaaaagagagctca
ttgtactgcacttaatgtcccagaagccagtaagcgctagggctaaatac
aagttgcaatgttgtaacgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_30224058_30225238
seq2: B6Ng01-001C16.b_42_1217 (reverse)

seq1  AACAGA--TCAGCA-GCTAAGACTGACACTGAGACGCCCCCCAAGCTAAG  47
      ||||||  |||||| |||||||||||   ||||| |||||| | ||||||
seq2  AACAGATTTCAGCACGCTAAGACTGAACGTGAGA-GCCCCCAAGGCTAAG  49

seq1  GCAGAGGCCCTAAGGGCTTTCATATGACCTCG-GGGGAGCTGCTCAAGGC  96
       ||||||  || | |||||||||||||||||| || ||||||||||| ||
seq2  CCAGAGG--CTTAAGGCTTTCATATGACCTCGAGGAGAGCTGCTCAA-GC  96

seq1  TCAAGACAGGGGACGTGGGGAGATGTCTTCAGTCCAGTGGGACTGATCAG  146
      |||||||| |||||||||||||||||| ||||| ||||||||||||||||
seq2  TCAAGACA-GGGACGTGGGGAGATGTC-TCAGT-CAGTGGGACTGATCAG  143

seq1  CTGATTGGCAGTGAGCCTGTCTTTTGTTCTCCTCCCCCCTGAAACTCGGT  196
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGATT-GCAGTGAGCCTGTC-TTTGTTCTCCTCCCCCCTGAAACTCGGT  191

seq1  GCAAGTTTGCTAATTATTTTTAGATTCTGTGTTTTAGGAAAGTTCAATGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTGCTAATTATTTTTAGATTCTGTGTTTTAGGAAAGTTCAATGA  241

seq1  TAGATCTCCAGCAGTCAGCAGCCATGGTGGGCATCCCTCTCAATTTCAGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCCAGCAGTCAGCAGCCATGGTGGGCATCCCTCTCAATTTCAGC  291

seq1  TTTTTCTCCTGGCAACAATGGCACAGTCAACACTAATGATGAAGACTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCTGGCAACAATGGCACAGTCAACACTAATGATGAAGACTGTG  341

seq1  GCTTCTTAGTCAGCTTCTCCCTCCACCCTTTGCCTCTGATGGAATATCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTAGTCAGCTTCTCCCTCCACCCTTTGCCTCTGATGGAATATCCT  391

seq1  TTCAGTGTGCACAACTTGAGCTCCTACTGTGTGCAGAGCCAAGAGAGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGCACAACTTGAGCTCCTACTGTGTGCAGAGCCAAGAGAGGGA  441

seq1  ACCATCCTGCAGGTAGTCAGGACCTAAGTATTTATCTGTCTGTCTGCCCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTGCAGGTAGTCAGGACCTAAGTATTTATCTGTCTGTCTGCCCA  491

seq1  TCTGCTGACAAAAGGTAATGGTAATGCCTGCAGGGCAACTTTTCCTTGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGACAAAAGGTAATGGTAATGCCTGCAGGGCAACTTTTCCTTGAA  541

seq1  TAGATTTGGAAATAGATTTTTGCTTTTCCGACTTAAGCAGAGTGGGCTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGGAAATAGATTTTTGCTTTTCCGACTTAAGCAGAGTGGGCTGA  591

seq1  ACCCCTTGTTTCCTCTTTCTGGGTAATAAATACTCTGGTGGTCTTCCTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGTTTCCTCTTTCTGGGTAATAAATACTCTGGTGGTCTTCCTGA  641

seq1  ATATTAGCACGATTGCATAGCATTGTGTAACTGTTTCTGTACGGATTACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCACGATTGCATAGCATTGTGTAACTGTTTCTGTACGGATTACA  691

seq1  TATGTTAGTATATGCCCTTCTCTTACAAGCTAGAAATAAAAGTTCAGATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGTATATGCCCTTCTCTTACAAGCTAGAAATAAAAGTTCAGATA  741

seq1  TTTTGGGGGGTTCTGGATAGCTGGTCTTCTTTACCGTGGTTTCTTATACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGGGTTCTGGATAGCTGGTCTTCTTTACCGTGGTTTCTTATACT  791

seq1  TGGGTATAGAGTCCAGCCTTTTCTCATTCGAGAATATGAGACAGTAAACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAGAGTCCAGCCTTTTCTCATTCGAGAATATGAGACAGTAAACA  841

seq1  TTGGTGAATGTCAGATTTCCTTATACTTGGGTATAGAGTCCAGCCTTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAATGTCAGATTTCCTTATACTTGGGTATAGAGTCCAGCCTTTTC  891

seq1  TCATTCGAGAATATGAGACAGTAAACACTGGTGAATGTCAGATGTCTTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCGAGAATATGAGACAGTAAACACTGGTGAATGTCAGATGTCTTCT  941

seq1  TCTAAGTTTCTGGACATTTCAGGGCTGTGGGTAGCAGGGGTCAACAACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTTCTGGACATTTCAGGGCTGTGGGTAGCAGGGGTCAACAACAA  991

seq1  CAGCTTTGGGTGGGGTGTGGCCAAAGCCTCTACTGCTAACTGAAGTCAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGGGTGGGGTGTGGCCAAAGCCTCTACTGCTAACTGAAGTCAGC  1041

seq1  CTTCCAGCAGACAGACAGATCTCTGGGCTATCTAGCATCTCTGTTACATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCAGACAGACAGATCTCTGGGCTATCTAGCATCTCTGTTACATG  1091

seq1  TACAATATGAGCTGTCCTGACACTGTGCAACCAGCTGAAGAGCCATTGGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATGAGCTGTCCTGACACTGTGCAACCAGCTGAAGAGCCATTGGC  1141

seq1  TACAGAAGCCTTTGGCAGCAGCAGGAGGAGAATTC  1181
      |||||||||||||||||||||||||||||||||||
seq2  TACAGAAGCCTTTGGCAGCAGCAGGAGGAGAATTC  1176