BAC Information

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BAC

Clone NameB6Ng01-001K12
Chromosome12 (Build37)
Map Location 46,540,620 - 46,620,732
singlet/doubletdoublet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001K12.bB6Ng01-001K12.g
ACCDH839914DH839915
length1,1561,168
definitionDH839914|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K12, 5' end.DH839915|Mus musculus domesticus DNA, BAC clone: B6Ng01-001K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,540,620 - 46,541,790)(46,619,558 - 46,620,732)
sequence
gaattccctaaaagtcgtatatgtcctcttcacagtatgtccttgcagat
gctgggatattttggagatgggagtcttttctctctaggaatctattttc
tggatcatgagactgaaggtcaatgaacttgctgctttcttgcctcagct
tagaatctcacaaggacatttggacttgaaaactcagaagagacgtaaga
ctttgcatgtcacattaggccagggtgattcccctctcagagagactcct
gcgtgaggatgaggcttgcataggccttacatttcaggactgaactggcc
cttctgactaattggagactgcttctggagtttgaagctaggaacaaaac
tcagagtagatctagggatctgactcataccctgctattctggttaatta
ctgcaactatgcttgaggcaaagtgactagtgctaagtaataaaaataga
taaggccacaaaggacagtgggtaattgttttcaaaactgaaggcacttt
agaaagataaaactaagaacaaaaggaaacaacatggaaaggaaaaatac
ctgtaaaatctgttattcttaactgctacaaccagaaagcaatacaatat
ttttttcttgtaattcagacatgtattgagtttctgtttcaattgaaggc
tcattattaaatttctgtttgaaggttttcaattgttactaaataataag
atttttaaacgaaacaggccaatcttaaagagtagattaatagggataaa
aatgcagacctttgaattctttcccacagagtagctagcataatgtctgc
agtcagtggccagctgttcatccttccaagtacaggagcagctatgggat
ggagagcagtgttcaggcttggagccgtgggtagtgtactattagtcaat
ggagagaagagtgggttgaattgtttcttttccaccagcatttgaaactt
ctgacttcctgtctgttgtttcttcttcatttttaccctcagtattgtct
ctactcctttctttatttcttcctttttcctttccattttcgggtctact
tcttacttttgttgattgtcttacatctttatgtttacctcattcttctt
ctctcttgtctcctgcctgtaaatgaatagccaatacttaagtatatttg
gaatta
gaattccttaatgtctgggaactgtagagagacagagcaaggtcattgca
ctggggacaagtcttacttaaagagaaaaagaggattccaaaccaaatta
attacctacactttttcaattttcaagtctaaaaatagacttgaaagcaa
cttctctcaaaattctaagttctaaaagtcaagagaaacataattcacct
aaagaaaaataaaatacattgctacagagaaaaaaagataatgaagaggt
tgacgttttatacacgtgtagtttatgttactttttggtcattaaaaggg
aagggataaactaagataaggtgatgtgaatgagtgacatatgtatgtgt
tcatacgtgtctctttgtgtgtgtaatatgttttgagagaaagtgatgtc
atacctttcttcatgcaaaacattaaatgtctaactcttatatactagtg
aaatatactgaaaaaatatattcttcattgcctttagataaacatgcatg
caagcatatgtgtcacaagcccactcagtgctctctcccgaacaaaagga
taataaaaaacacatttactctgaattgaaatggagtcaggtttcatttg
aaaagttgttatattacacaatagtaagatcaagcatgaaatatttacaa
actgaaatagttgttaaacttacttcggaaagttatttgatgtaattgat
catttctactttctaaaaggtaaattatagcaggccttatctgcctaact
ctctgaggattcagtaaggtaataattgaataaaagatactacctggcaa
actcccatcctgacatgaggtactcattcaagtaatgtgtattctctgga
tagacaacaatatacaaacagaccaatagctggatgtgaacagcaactct
tggacaatacctgtctgtgagattgaagtgagtgtccgagatcccggtga
tgctctcagaggcattgtctgtttcttgcaatgccataccccagtgatgg
atgttggtttttccccattcactcgggaagtgaaagagcatatttctttc
taagtctcgagaagcagcccacatgtggaaaaacattgttttctatctgt
actttaaaaactgacagtgaagtgtgttgcagcttctataaccatcacct
ccaacatagatttagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46540620_46541790
seq2: B6Ng01-001K12.b_48_1203

seq1  GAATTCCCTAAAAGTCGTATATGTCCTCTTCACAGTATGTCCTTGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAAAAGTCGTATATGTCCTCTTCACAGTATGTCCTTGCAGAT  50

seq1  GCTGGGATATTTTGGAGATGGGAGTCTTTTCTCTCTAGGAATCTATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATATTTTGGAGATGGGAGTCTTTTCTCTCTAGGAATCTATTTTC  100

seq1  TGGATCATGAGACTGAAGGTCAATGAACTTGCTGCTTTCTTGCCTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATGAGACTGAAGGTCAATGAACTTGCTGCTTTCTTGCCTCAGCT  150

seq1  TAGAATCTCACAAGGACATTTGGACTTGAAAACTCAGAAGAGACGTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTCACAAGGACATTTGGACTTGAAAACTCAGAAGAGACGTAAGA  200

seq1  CTTTGCATGTCACATTAGGCCAGGGTGATTCCCCTCTCAGAGAGACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATGTCACATTAGGCCAGGGTGATTCCCCTCTCAGAGAGACTCCT  250

seq1  GCGTGAGGATGAGGCTTGCATAGGCCTTACATTTCAGGACTGAACTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAGGATGAGGCTTGCATAGGCCTTACATTTCAGGACTGAACTGGCC  300

seq1  CTTCTGACTAATTGGAGACTGCTTCTGGAGTTTGAAGCTAGGAACAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACTAATTGGAGACTGCTTCTGGAGTTTGAAGCTAGGAACAAAAC  350

seq1  TCAGAGTAGATCTAGGGATCTGACTCATACCCTGCTATTCTGGTTAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTAGATCTAGGGATCTGACTCATACCCTGCTATTCTGGTTAATTA  400

seq1  CTGCAACTATGCTTGAGGCAAAGTGACTAGTGCTAAGTAATAAAAATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTATGCTTGAGGCAAAGTGACTAGTGCTAAGTAATAAAAATAGA  450

seq1  TAAGGCCACAAAGGACAGTGGGTAATTGTTTTCAAAACTGAAGGCACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCACAAAGGACAGTGGGTAATTGTTTTCAAAACTGAAGGCACTTT  500

seq1  AGAAAGATAAAACTAAGAACAAAAGGAAACAACATGGAAAGGAAAAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAAAACTAAGAACAAAAGGAAACAACATGGAAAGGAAAAATAC  550

seq1  CTGTAAAATCTGTTATTCTTAACTGCTACAACCAGAAAGCAATACAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAATCTGTTATTCTTAACTGCTACAACCAGAAAGCAATACAATAT  600

seq1  TTTTTTCTTGTAATTCAGACATGTATTGAGTTTCTGTTTCAATTGAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTGTAATTCAGACATGTATTGAGTTTCTGTTTCAATTGAAGGC  650

seq1  TCATTATTAAATTTCTGTTTGAAGGTTTTCAATTGTTACTAAATAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTAAATTTCTGTTTGAAGGTTTTCAATTGTTACTAAATAATAAG  700

seq1  ATTTTTAAACGAAACAGGCCAATCTTAAAGAGTAGATTAATAGGGATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAACGAAACAGGCCAATCTTAAAGAGTAGATTAATAGGGATAAA  750

seq1  AATGCAGACCTTTGAATTCTTTCCCACAGAGTAGCTAGCATAATGTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGACCTTTGAATTCTTTCCCACAGAGTAGCTAGCATAATGTCTGC  800

seq1  AGTCAGTGGCCAGCTGTTCATCCTTCCAAGTACAGGAGCAGCTATGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGGCCAGCTGTTCATCCTTCCAAGTACAGGAGCAGCTATGGGAT  850

seq1  GGAGAGCAGTGTTCAGGCTTGGAGCCGTGGGTAGTGTACTATTAGTCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCAGTGTTCAGGCTTGGAGCCGTGGGTAGTGTACTATTAGTCAAT  900

seq1  GGAGAGAAAGAGTGGGTTGAATTGTTTCTTTTCCACCAGCATTTGAAACT  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAG-AAGAGTGGGTTGAATTGTTTCTTTTCCACCAGCATTTGAAACT  949

seq1  TCTGACTTCCTGTCTGTTGTTTCTTCTTCATTTTTACCCTCAGTATTGTT  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGACTTCCTGTCTGTTGTTTCTTCTTCATTTTTACCCTCAGTATTG-T  998

seq1  CTCTACTCCTTTCTTTTATTTCTTCCTTTTTCCTTTCCATTTTCCGGGTC  1050
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CTCTACTCCTTTC-TTTATTTCTTCCTTTTTCCTTTCCATTTT-CGGGTC  1046

seq1  TACCTTCTTACTTTTGTTGATTGTCTTACCATCTTTATTGTTTACCTCAT  1100
      || ||||||||||||||||||||||||| |||||||| ||||||||||| 
seq2  TA-CTTCTTACTTTTGTTGATTGTCTTA-CATCTTTA-TGTTTACCTCA-  1092

seq1  TTCTTCTTCTCTCCTTGTTCTCCTGCCTGTAATATTAAATAGCCACAATA  1150
      |||||||||||| |||| |||||||||||||  | | ||||||  |||||
seq2  TTCTTCTTCTCT-CTTG-TCTCCTGCCTGTA--AATGAATAGC--CAATA  1136

seq1  CTTAAGTATATTTGAGAATTA  1171
      |||||||||||||| ||||||
seq2  CTTAAGTATATTTG-GAATTA  1156

seq1: chr12_46619558_46620732
seq2: B6Ng01-001K12.g_65_1232 (reverse)

seq1  TGACTAAATCTATGTTGGAAGGTGATGG-TATAGGAAGACTGGCAAACCA  49
      |||||||||||||||||| ||||||||| |||| |||| || ||||  ||
seq2  TGACTAAATCTATGTTGG-AGGTGATGGTTATA-GAAG-CT-GCAA--CA  44

seq1  CACTTCACTGTCAGTTTTTAAAGTACAGATAGAAAACAATGTTTTTCCCA  99
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACTTCACTGTCAGTTTTTAAAGTACAGATAGAAAACAATGTTTTT-CCA  93

seq1  CATGTGGGCTGCCTTCTCGAGACTTAG-AAGAAATATGCTCTTTCACTTC  148
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  CATGTGGGCTG-CTTCTCGAGACTTAGAAAGAAATATGCTCTTTCACTTC  142

seq1  CCGAGTGAATGGGGAAAAACCAACATCCATCACTGGGGTATGGCATTGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGAATGGGGAAAAACCAACATCCATCACTGGGGTATGGCATTGCA  192

seq1  AGAAACAGACAATGCCTCTGAGGAGCATCACCGGGATCTCGGACACTCAC  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAAACAGACAATGCCTCTGA-GAGCATCACCGGGATCTCGGACACTCAC  241

seq1  TTCAATCTCACAGACAGGTATTGTCCAAGAGTTGCTGTTCACATCCAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTCACAGACAGGTATTGTCCAAGAGTTGCTGTTCACATCCAGCT  291

seq1  ATTGGTCTGTTTGTATATTGTTGTCTATCCAGAGAATACACATTACTTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTGTTTGTATATTGTTGTCTATCCAGAGAATACACATTACTTGA  341

seq1  ATGAGTACCTCATGTCAGGATGGGAGTTTGCCAGGTAGTATCTTTTATTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACCTCATGTCAGGATGGGAGTTTGCCAGGTAGTATCTTTTATTC  391

seq1  AATTATTACCTTACTGAATCCTCAGAGAGTTAGGCAGATAAGGCCTGCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTACCTTACTGAATCCTCAGAGAGTTAGGCAGATAAGGCCTGCTA  441

seq1  TAATTTACCTTTTAGAAAGTAGAAATGATCAATTACATCAAATAACTTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACCTTTTAGAAAGTAGAAATGATCAATTACATCAAATAACTTTC  491

seq1  CGAAGTAAGTTTAACAACTATTTCAGTTTGTAAATATTTCATGCTTGATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTAAGTTTAACAACTATTTCAGTTTGTAAATATTTCATGCTTGATC  541

seq1  TTACTATTGTGTAATATAACAACTTTTCAAATGAAACCTGACTCCATTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTGTGTAATATAACAACTTTTCAAATGAAACCTGACTCCATTTC  591

seq1  AATTCAGAGTAAATGTGTTTTTTATTATCCTTTTGTTCGGGAGAGAGCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGTAAATGTGTTTTTTATTATCCTTTTGTTCGGGAGAGAGCAC  641

seq1  TGAGTGGGCTTGTGACACATATGCTTGCATGCATGTTTATCTAAAGGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGCTTGTGACACATATGCTTGCATGCATGTTTATCTAAAGGCAA  691

seq1  TGAAGAATATATTTTTTCAGTATATTTCACTAGTATATAAGAGTTAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATATATTTTTTCAGTATATTTCACTAGTATATAAGAGTTAGACA  741

seq1  TTTAATGTTTTGCATGAAGAAAGGTATGACATCACTTTCTCTCAAAACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTTTGCATGAAGAAAGGTATGACATCACTTTCTCTCAAAACAT  791

seq1  ATTACACACACAAAGAGACACGTATGAACACATACATATGTCACTCATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACACACAAAGAGACACGTATGAACACATACATATGTCACTCATTC  841

seq1  ACATCACCTTATCTTAGTTTATCCCTTCCCTTTTAATGACCAAAAAGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCTTATCTTAGTTTATCCCTTCCCTTTTAATGACCAAAAAGTAA  891

seq1  CATAAACTACACGTGTATAAAACGTCAACCTCTTCATTATCTTTTTTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTACACGTGTATAAAACGTCAACCTCTTCATTATCTTTTTTTCT  941

seq1  CTGTAGCAATGTATTTTATTTTTCTTTAGGTGAATTATGTTTCTCTTGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAATGTATTTTATTTTTCTTTAGGTGAATTATGTTTCTCTTGAC  991

seq1  TTTTAGAACTTAGAATTTTGAGAGAAGTTGCTTTCAAGTCTATTTTTAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAACTTAGAATTTTGAGAGAAGTTGCTTTCAAGTCTATTTTTAGA  1041

seq1  CTTGAAAATTGAAAAAGTGTAGGTAATTAATTTGGTTTGGAATCCTCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAATTGAAAAAGTGTAGGTAATTAATTTGGTTTGGAATCCTCTTT  1091

seq1  TTCTCTTTAAGTAAGACTTGTCCCCAGTGCAATGACCTTGCTCTGTCTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAAGTAAGACTTGTCCCCAGTGCAATGACCTTGCTCTGTCTCT  1141

seq1  CTACAGTTCCCAGACATTAAGGAATTC  1175
      |||||||||||||||||||||||||||
seq2  CTACAGTTCCCAGACATTAAGGAATTC  1168