BAC Information

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BAC

Clone NameB6Ng01-001L02
Chromosome12 (Build37)11 (Build37)
Map Location 7,634,781 - 7,635,9295,680,756 - 5,681,881
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668380
Downstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001L02.bB6Ng01-001L02.g
ACCDH839940DH839941
length1,1501,117
definitionDH839940|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L02, 5' end.DH839941|Mus musculus domesticus DNA, BAC clone: B6Ng01-001L02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,634,781 - 7,635,929)(5,680,756 - 5,681,881)
sequence
gaattcagggatcaaaaaaggcatggaaaaaatttgaacgtcatgttgag
ctggtatcggcttctggaacaccgaaaggatctcccatctcggctccatc
gtttgtgcttgtgggaccatccaccacatccacaggggcaattggatcag
gagcctcattcttgcagcgtctcaccaacctctccggcacccaaagaggt
tccgtctaatcctgtggaaacacacaaacagaccctctcacccacgtcaa
cacctgatctggtagatccccagggagatggatacaatacctcgtggtga
tgagacgataacctcaatcacctgtgtgtccatctggggagtcattacga
gagtcaagttttcactagcttcccctctgttgggcaatgatttccacacc
cttatagcaatctgattcacctgctcaaacacctgcagtggatatcctgt
ctgttgttgtgcaaatcgaccttgaccaagcagcatatccctatcccatg
ctggatttcctgcaacagcattagcagctgcctgttcatttgcaaattca
ataaggaaggctttccaatctatatactgcccaggtgaaaggcatgcctt
cactaagcctgcccaatcggacagcgtcatgcagtgtctattcaaggcct
ccacttgagccacagtataggaggcagttaagctgtacgtctgcacagac
tcagcaaagttcctgattactttgaaatctagaggctcatgatatctctg
ccctgcttggttggtgaaaataggacatcccagcaaggagaatctaacct
ctctccaaatctctggacagaaggtccgcctataggtggctgctgaggag
gcatagggaggaggcgcaaaagctaattcgccttcctcctccacctctac
tcttttattttgttctttctgtccacctgataacactgtgtctcctttcc
ttttttcctttttctttttaagcccttctcctcttccgacatactttctt
gttgctccataagaattttctgacctgtcttgactgccttctcgattcaa
cagtacagagtccatattatcggaacaaacaagaccaaactatccaccta
cccccaaaggtcaatgggagaaaagctaactaccagtggaggatctattg


gcacacatataaacaaagcacttgagagttcagggccagcctaggaggga
ccccgcctcaaaaaaaaacaaagcaaaacaaacaaaacaaaacaaaacaa
tccaatctacaccatgctatagaatgctaggagctctggaacagagattg
agtacggtagggcgtgcgtgtgggacgagccacccacagccggtatgagg
agcataaggctctgggcactgggagaggcctcaggctatggggcaacggg
cagggcaggctttggaatgaaacaaacaaacaagcaaacaaaaacaaaaa
ccaagaggcctgcagaggtagatatggtaaatccagaaggacagaactac
cgtactgttcaggatcacagtgtaccccacacatctaggaaacatttgcc
agaatgcctcttttctgggttgtgcctcagggaggcagcctaatcccact
gcccagtaaaggcaggggcagccatcagagtctgctagcctccagggcca
gtggcatcttaggtaaggagtcagaaaagatggagggaaagggggtagca
gcaaggacacttgagaaaggacaggcagccctgagtgctgtggagggata
tctacagccctggagtgccaaagagttgagtgccttcattaacggagcct
gcccttcccacgggcagctctagctgtaggaactacggttaggaccttgg
gctcgatgaagccagtttgttttgagtcatggtagatttagggcaaagca
taaatactgttctctgcatttcatctgttgctcagcaagacctggtaaag
tatttcctttgtccaagtcctctgacattgtcctcaacacaggagggcac
agaagcagcggtgagggcacagactggtcttgcagttctggttcggagtc
tctaacttcagcattcggaattcctgtcttcttgtcagtagacaaggctg
ctggggcaccaaagatgtgtggtgtgggtacagacgggctgttggaagag
tgtgatgatgagtgaggccaggaccacgtgagattcccagaacagtgtgc
tgtgactacactatgacgggtgtctgctgaatttaacatcaaatattatc
gcgacttgaacagaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7634781_7635929
seq2: B6Ng01-001L02.b_47_1196

seq1  GAATTCAGGGATC-AAAAAGGCATGG-AAAAATTTGAACGTCATGTCGAG  48
      ||||||||||||| |||||||||||| ||||||||||||||||||| |||
seq2  GAATTCAGGGATCAAAAAAGGCATGGAAAAAATTTGAACGTCATGTTGAG  50

seq1  CTGGTATCGGCTTCTGGAACACCGAAAGGATCTCCCATCTCGGCTCCATC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCGGCTTCTGGAACACCGAAAGGATCTCCCATCTCGGCTCCATC  100

seq1  GTTTGTGCTTATGGGACCATCCACCACATCCACAGGGGCAACTGGATCAG  148
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  GTTTGTGCTTGTGGGACCATCCACCACATCCACAGGGGCAATTGGATCAG  150

seq1  GAGCCTCATTCTTGCAGCGTCTCACCAACCTCTCCGGCACCCAAAGAGGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCATTCTTGCAGCGTCTCACCAACCTCTCCGGCACCCAAAGAGGT  200

seq1  TCCGTCTAGTCCTGTGGAAACACAAAAACAGACCCTCTCGCCCACATCAA  248
      |||||||| ||||||||||||||| |||||||||||||| ||||| ||||
seq2  TCCGTCTAATCCTGTGGAAACACACAAACAGACCCTCTCACCCACGTCAA  250

seq1  CACCAGATCTGGTCGATCCCCAGGGGGGATGGACACAATACCTCGTGGTG  298
      |||| |||||||| |||||||| ||| |||||| ||||||||||||||||
seq2  CACCTGATCTGGTAGATCCCCA-GGGAGATGGATACAATACCTCGTGGTG  299

seq1  ATGAGACCATAACCTCAATCACCTGTGTGCCCATCTGGGGAGTCAATACG  348
      ||||||| ||||||||||||||||||||| ||||||||||||||| ||||
seq2  ATGAGACGATAACCTCAATCACCTGTGTGTCCATCTGGGGAGTCATTACG  349

seq1  AGAGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTCCACGC  398
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAGTCAAGTTTTCACTAGCTTCCCCTCTGTTGGGCAATGATTTCCACAC  399

seq1  CCTTATAGCAATCTGATTCACCTGCTCAAACACCTGCAGTGGATATTCTG  448
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTATAGCAATCTGATTCACCTGCTCAAACACCTGCAGTGGATATCCTG  449

seq1  TTTGTTGTTGTGCAAATTGACCTTGACCAAGCAGCATATCCCTATCCCAT  498
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTGTGCAAATCGACCTTGACCAAGCAGCATATCCCTATCCCAT  499

seq1  GCTGGATTTCCTGCAACAGCATTAGCAGCTGCCTGCTCATTTGCAAATTT  548
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GCTGGATTTCCTGCAACAGCATTAGCAGCTGCCTGTTCATTTGCAAATTC  549

seq1  AATAAGGAAGGCTTTCCAATCTAAATACTGCCCAGTTGAAAGGCATGCCT  598
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AATAAGGAAGGCTTTCCAATCTATATACTGCCCAGGTGAAAGGCATGCCT  599

seq1  TCACTAAGCCTGCCCAATCGGACGGCATCATGCAGTGTCTATTCAAGGCC  648
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  TCACTAAGCCTGCCCAATCGGACAGCGTCATGCAGTGTCTATTCAAGGCC  649

seq1  TCTACTTGAGCCACAGTATAGGAGGCAGTTAAGCTGTACGTCTGCACGGA  698
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCACTTGAGCCACAGTATAGGAGGCAGTTAAGCTGTACGTCTGCACAGA  699

seq1  CTCAGCAAAATTCCTGATTACTTTGAAATCCAGAGGCTCATGATATCTCT  748
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  CTCAGCAAAGTTCCTGATTACTTTGAAATCTAGAGGCTCATGATATCTCT  749

seq1  GCCCTGCTTGGTCGGTGAAAATAGGACATCCCAGTAAGGAGAATCTAACC  798
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  GCCCTGCTTGGTTGGTGAAAATAGGACATCCCAGCAAGGAGAATCTAACC  799

seq1  TCTCTCCAAATCTCCGGACAGAAGGTCTGCCTATAGGTGGCTGCTGAGGA  848
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  TCTCTCCAAATCTCTGGACAGAAGGTCCGCCTATAGGTGGCTGCTGAGGA  849

seq1  GGCATAGGGAGGAGGCAAAGAAGCTAATTCGCCTTCCTCCTCCGCCTCGG  898
      ||||||||||||||||  | ||||||||||||||||||||||| ||||  
seq2  GGCATAGGGAGGAGGCGCAAAAGCTAATTCGCCTTCCTCCTCCACCTCTA  899

seq1  C-----TATTTTGTCCTTTCTGTCCACCTGATAACACTGTGTCTCCTTTC  943
      |     |||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTTTTATTTTGTTCTTTCTGTCCACCTGATAACACTGTGTCTCCTTTC  949

seq1  --TTTTTCCTTTTTCTTTTTAAGCCCTTCTCCTCTTCTGACATACTTTCT  991
        ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTTTTCCTTTTTCTTTTTAAGCCCTTCTCCTCTTCCGACATACTTTCT  999

seq1  TATTGCTCTGTAAGGATTTTCTGACCTGTCTTGACTGCC-TCTCGATTCA  1040
      | ||||||  |||| |||||||||||||||||||||||| ||||||||| 
seq2  TGTTGCTCCATAAGAATTTTCTGACCTGTCTTGACTGCCTTCTCGATTC-  1048

seq1  AACAGTAACAGAGTCCATA-TATCAGAACAAACAAGACCAAAACTATCAG  1089
      |||||| |||||||||||| |||| |||||||||||||| ||||||||  
seq2  AACAGT-ACAGAGTCCATATTATCGGAACAAACAAGACC-AAACTATC-C  1095

seq1  ACCTACCCACAAAGGGTCAATGGGAGAAAAAAAGCATAACTACACAG-CG  1138
      |||||||| |||| ||||||||||||   |||||| ||||||| |||  |
seq2  ACCTACCCCCAAA-GGTCAATGGGAG---AAAAGC-TAACTAC-CAGTGG  1139

seq1  AGGATCTATTG  1149
      |||||||||||
seq2  AGGATCTATTG  1150


seq1: chr11_5680756_5681881
seq2: B6Ng01-001L02.g_78_1194

seq1  GCACACATATAAACAAAGCACTTGAGAGTTCAGGGCCAGCCTAGGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATATAAACAAAGCACTTGAGAGTTCAGGGCCAGCCTAGGAGGGA  50

seq1  CCCCGCCTCAAAAAAAAACAAAGCAAAACAAACAAAACAAAACAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCTCAAAAAAAAACAAAGCAAAACAAACAAAACAAAACAAAACAA  100

seq1  TCCAATCTACACCATGCTATAGAATGCTAGGAGCTCTGGAACAGAGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTACACCATGCTATAGAATGCTAGGAGCTCTGGAACAGAGATTG  150

seq1  AGTACGGTAGGGCGTGCGTGTGGGACGAGCCACCCACAGCCGGTATGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGGTAGGGCGTGCGTGTGGGACGAGCCACCCACAGCCGGTATGAGG  200

seq1  AGCATAAGGCTCTGGGCACTGGGAGAGGCCTCAGGCTATGGGGCAACGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGGCTCTGGGCACTGGGAGAGGCCTCAGGCTATGGGGCAACGGG  250

seq1  CAGGGCAGGCTTTGGAATGAAACAAACAAACAAGCAAACAAAAACAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGGCTTTGGAATGAAACAAACAAACAAGCAAACAAAAACAAAAA  300

seq1  CCAAGAGGCCTGCAGAGGTAGATATGGTAAATCCAGAAGGACAGAACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGCCTGCAGAGGTAGATATGGTAAATCCAGAAGGACAGAACTAC  350

seq1  CGTACTGTTCAGGATCACAGTGTACCCCACACATCTAGGAAACATTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTGTTCAGGATCACAGTGTACCCCACACATCTAGGAAACATTTGCC  400

seq1  AGAATGCCTCTTTTCTGGGTTGTGCCTCAGGGAGGCAGCCTAATCCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCTCTTTTCTGGGTTGTGCCTCAGGGAGGCAGCCTAATCCCACT  450

seq1  GCCCAGTAAAGGCAGGGGCAGCCATCAGAGTCTGCTAGCCTCCAGGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTAAAGGCAGGGGCAGCCATCAGAGTCTGCTAGCCTCCAGGGCCA  500

seq1  GTGGCATCTTAGGTAAGGAGTCAGAAAAGATGGAGGGAAAGGGGGTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCTTAGGTAAGGAGTCAGAAAAGATGGAGGGAAAGGGGGTAGCA  550

seq1  GCAAGGACACTTGAGAAAGGACAGGCAGCCCTGAGTGCTGTGGAGGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACACTTGAGAAAGGACAGGCAGCCCTGAGTGCTGTGGAGGGATA  600

seq1  TCTACAGCCCTGGAGTGCCAAAGAGTTGAGTGCCTTCATTAACGGAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGCCCTGGAGTGCCAAAGAGTTGAGTGCCTTCATTAACGGAGCCT  650

seq1  GCCCTTCCCACGGGCAGCTCTAGCTGTAGGAACTACGGTTAGGACCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCCACGGGCAGCTCTAGCTGTAGGAACTACGGTTAGGACCTTGG  700

seq1  GCTCGATGAAGCCAGTTTGTTTTGAGTCATGGTAGATTTAGGGCAAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGATGAAGCCAGTTTGTTTTGAGTCATGGTAGATTTAGGGCAAAGCA  750

seq1  TAAATACTGTTCTCTGCATTTCATCTGTTGCTCAGCAAGACCTGGTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTGTTCTCTGCATTTCATCTGTTGCTCAGCAAGACCTGGTAAAG  800

seq1  TATTTCCTTTGTCCAAGTCCTCTGACATTGTCCTCAACACAGGAGGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTTTGTCCAAGTCCTCTGACATTGTCCTCAACACAGGAGGGCAC  850

seq1  AGAAGCAGCGGTGAGGGCACAGACTGGTCTTGCAGTTCTGGTTCGGAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGCGGTGAGGGCACAGACTGGTCTTGCAGTTCTGGTTCGGAGTC  900

seq1  TCTAACTTCAGCATTCGGAATTCCTGTCTTCTTGTCAGTAGACAAGGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTCAGCATTCGGAATTCCTGTCTTCTTGTCAGTAGACAAGGCTG  950

seq1  CTGGGGCACCAAAGATGTGTGGTGTGGGTACAGACGGGCGGTTGGAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGGGGCACCAAAGATGTGTGGTGTGGGTACAGACGGGCTGTTGGAAGAG  1000

seq1  TGTGAAGGATGGAAGTGAAGGCCAGGACCACGTGGAGGAATCCCAGAACA  1050
      |||| | ||||  |||| ||||||||||||||||   || ||||||||||
seq2  TGTG-ATGATG--AGTG-AGGCCAGGACCACGTG--AGATTCCCAGAACA  1044

seq1  GTGTGCTGTGACTACACTATGACGTGTGTCCTGCTGGTATTTTAACATCA  1100
      |||||||||||||||||||||||| |||| ||||||  | ||||||||||
seq2  GTGTGCTGTGACTACACTATGACGGGTGT-CTGCTG--AATTTAACATCA  1091

seq1  AATATTATCGCGACTTGAACAGAATC  1126
      ||||||||||||||||||||||||||
seq2  AATATTATCGCGACTTGAACAGAATC  1117


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