BAC Information

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BAC

Clone NameB6Ng01-002A23
ChromosomeX (Build37)12 (Build37)
Map Location 107,331,566 - 107,331,79731,554,544 - 31,555,128
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSh3bgrl, EG622976, LOC100042831, LOC213474, LOC245573
Downstream geneEG634340, LOC668530, LOC100043316, Pou3f4, Cylc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002A23.bB6Ng01-002A23.g
ACCDH840199DH840200
length1,108585
definitionDH840199|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A23, 5' end.DH840200|Mus musculus domesticus DNA, BAC clone: B6Ng01-002A23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,331,566 - 107,331,797)(31,554,544 - 31,555,128)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatgcattcacattct
tatgttcttgttttaatccaaaatacctaatatcaagattttcatgtcat
ttcagatcaggtcattcctgaagactagcctgttaaaactcactgcttag
caaaactgacttggaactacatttttttcctctttcaattgaaaatggat
ttttttttcaagtacagtacattctgaacatggtttctcctctctcatct
ccttctggtccttcccacctctccaacccatccaactttaaatattcttt
ctatccctctttagaaaacagacaagaaattaaaaaaatgatgagaaagc
ataagaaacacacacacacacacacacacacacacacacacacacacaca
caccactttaacggcacagaattgaaaaccataatatagaagcaaaagac
cagtaagacaaaaatggcaaaacaaagcaatatgattaaaaatttacaaa
actactattgttcttgtctttgtgttatccatctgggcaggcctgctctt
aagtgtggtttatatatccagttaagtgtggtttatatatgtatccagtt
agaatccactgaagaagaattttcctttgcaagcacatgccatttagaga
tagcttattggttaagaacagaagcttgtatccacttcctccaccaaacc
ccctagcacctggactccattggacttggacctgcatagccctgtgcttg
ttgccatagtctctgtgaattcatctgtatgtcagtactgttgtgccttg
tccctgattttagtgggattgtttcaagtttctctctatttaattggatg
ctggttatgtttaagtatggggccttaaattcctgatctctccaagactt
ttacataaaggagtgtttagaattcttgttgaaggatttttcagcatcta
ataagatggatcatgtgaatttttttttctttgagtttgttttatatagt
ggaatatg
gaattcttagaatgtcattcaatcctgattctttgtggccttgggacttg
acaaaggctctgcatctgaatctctcaggctgttctgcatcctatacagc
ttcacatttctgcccagtattttgtgtctggtgtgtatgaaaatgtagcc
atctaagatgaagctgggcaaatgtgtgtgctaccagagttctgtgaggt
aagtaaatcaagtcacccctggaatataagaacagtcgttttcaatgtgt
agtcaaatgtattcaggacactgttatccaaactgagattttaaatgtta
agagctagagaaagtacccagagaggtactttcttttttaaaggggtctg
aagccccataggaggaatatcaatatgaactagccagtacccccagagct
ccttggaactaaaccaccaatcaaagaaaacacatggtggaacttgtgtt
tctagctatatatgtagcagaggatggccttgtaggtcaccaatgggagg
agaggcccttggtcctgtgaaggttctatgccccagcataggggaacacc
aagaccaggaatgggagtgggtgggttggggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_107331566_107331797
seq2: B6Ng01-002A23.b_945_1153 (reverse)

seq1  CATAATCCACTATAT-AAACAAACTCAAAGACAAAGAAAAAACATATGAT  49
      |||| |||||||||| ||||||||||||||| ||| ||||  || |||||
seq2  CATATTCCACTATATAAAACAAACTCAAAGA-AAAAAAAATTCACATGAT  49

seq1  -CATCTCATTAGTTGCAGAGAAAGCATTTGAC--GAAATC-CAACACCCA  95
       ||||| ||||| ||| || ||| | ||  ||  ||| ||  ||||| | 
seq2  CCATCTTATTAGATGCTGAAAAATCCTTCAACAAGAATTCTAAACACTCC  99

seq1  TTCATAATAAAAGACTTGGAAAGATCAGTAATTT-GGGGCCTATACCTAA  144
      || ||  |||||| |||||| ||||||| |||||  || || |||| |||
seq2  TTTAT-GTAAAAGTCTTGGAGAGATCAGGAATTTAAGGCCCCATACTTAA  148

seq1  ACATGGTAAAAGCAGTCTACAGCAAACCAGTAGCCAACATCAAAGTAAAT  194
      ||||                    ||||||       |||| || |||||
seq2  ACAT--------------------AACCAG-------CATCCAATTAAAT  171

seq1  GGTGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGAC  232
       | ||||| || ||| ||||||||||||||||||||||
seq2  AGAGAGAAACTTGAAACAATCCCACTAAAATCAGGGAC  209

seq1: chr12_31554544_31555128
seq2: B6Ng01-002A23.g_67_651

seq1  GAATTCTTAGAATGTCATTCAATCCTGATTCTTTGTGGCCTTGGGACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAATGTCATTCAATCCTGATTCTTTGTGGCCTTGGGACTTG  50

seq1  ACAAAGGCTCTGCATCTGAATCTCTCAGGCTGTTCTGCATCCTATACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCTCTGCATCTGAATCTCTCAGGCTGTTCTGCATCCTATACAGC  100

seq1  TTCACATTTCTGCCCAGTATTTTGTGTCTGGTGTGTATGAAAATGTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTCTGCCCAGTATTTTGTGTCTGGTGTGTATGAAAATGTAGCC  150

seq1  ATCTAAGATGAAGCTGGGCAAATGTGTGTGCTACCAGAGTTCTGTGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGATGAAGCTGGGCAAATGTGTGTGCTACCAGAGTTCTGTGAGGT  200

seq1  AAGTAAATCAAGTCACCCCTGGAATATAAGAACAGTCGTTTTCAATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATCAAGTCACCCCTGGAATATAAGAACAGTCGTTTTCAATGTGT  250

seq1  AGTCAAATGTATTCAGGACACTGTTATCCAAACTGAGATTTTAAATGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATGTATTCAGGACACTGTTATCCAAACTGAGATTTTAAATGTTA  300

seq1  AGAGCTAGAGAAAGTACCCAGAGAGGTACTTTCTTTTTTAAAGGGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGAGAAAGTACCCAGAGAGGTACTTTCTTTTTTAAAGGGGTCTG  350

seq1  AAGCCCCATAGGAGGAATATCAATATGAACTAGCCAGTACCCCCAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCATAGGAGGAATATCAATATGAACTAGCCAGTACCCCCAGAGCT  400

seq1  CCTTGGAACTAAACCACCAATCAAAGAAAACACATGGTGGAACTTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAACTAAACCACCAATCAAAGAAAACACATGGTGGAACTTGTGTT  450

seq1  TCTAGCTATATATGTAGCAGAGGATGGCCTTGTAGGTCACCAATGGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTATATATGTAGCAGAGGATGGCCTTGTAGGTCACCAATGGGAGG  500

seq1  AGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGCATAGGGGAACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCCCAGCATAGGGGAACACC  550

seq1  AAGACCAGGAATGGGAGTGGGTGGGTTGGGGAACA  585
      |||||||||||||||||||||||||||||||||||
seq2  AAGACCAGGAATGGGAGTGGGTGGGTTGGGGAACA  585