BAC Information

Click to search

BAC

Clone NameB6Ng01-004G23
Chromosome12 (Build37)
Map Location 62,689,532 - 62,690,621
singlet/doubletsinglet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004G23.g
ACCDH841846
length1,100
definitionDH841846|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctttgggttaactggaaaccgaaaaagtaagaaggaggggtta
gagagatggggcatgggctcgaatttgaggaggagaaaactaatttattt
ttatatcagttttagcgtaactgtacataacagtattgtatgtatttcag
aaaatcagaatgaaaggattttgattgttttcatcagagataaattgatt
caggtattttatctgctgtaaatattacagagtgcacacatgtattggaa
gagctcatatctttaaaatatttaaagatcaaattacataattaatatat
aattgtactatcaaacaatgagtttcaggatactgaaaaacctcagatgt
aacacttacctctttatttctaccttttaatattttctgatattaaaatt
gaaaaaaaaacaataaaccaaaagtttttgtcatttccaaatcttgtttt
tatcagtttgtgtccttttaccacataaagtattctgaagatattttcaa
ctatcaatttatcagctatcaagtactgctggtattacctttcctaattt
acagaaatacaggattagagtatgattgactaaattactgaattgtttgt
tcactaagtgaaagggccactaatagtttctttcaaggtctcttccatat
ttcccacccacattgtttacatttttgaaattttggtcacttgaactcta
gaactgtcttcaatctcaaaacatctgaaccaaatgctttgtgtggaaga
atgaggttgtgtcttcaattgtaggatgaagacagaaacagagctatgtc
ataaaatagcatttttagtgatggttttgcaggtttgtctgcatccccta
tttcaactgtatatttcaatatcctctaaaatggaattaaaccaagtggg
aaaattgatctttgctgaaattcgtgtttcttcttctccacctaccacag
tggaacatttggaaaggcagtcttcaaatttggctccataagttatttaa
cctgcacttggtaggagatcgaaatgatacagtccattgtacttaacaat
gtaaattacttttgaaacattttggtgttgtgcatgaggccattaaaaat

quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62689532_62690621
seq2: B6Ng01-004G23.g_66_1165

seq1  GAATTCCCAGTGGCTTAACTGGAAGCCAGAAAAAATAAGAAGGAGGGGTT  50
      ||||||||  ||| |||||||||| || |||||| |||||||||||||||
seq2  GAATTCCCTTTGGGTTAACTGGAAACC-GAAAAAGTAAGAAGGAGGGGTT  49

seq1  AAAAAAGATGGGGCAATGGGCTCAAATTTATAGAGGAGAAAACTAATTTA  100
       | | ||||||||| |||||||| |||||   ||||||||||||||||||
seq2  -AGAGAGATGGGGC-ATGGGCTCGAATTTGAGGAGGAGAAAACTAATTTA  97

seq1  TTTTTATATCAGTTTTAGCGTAACTGTACATAACAGTATTGTATGTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATCAGTTTTAGCGTAACTGTACATAACAGTATTGTATGTATTT  147

seq1  CAGAAAATCAGAATGAAAGGATTTTGATTGTTTTCATCAGAGATAAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCAGAATGAAAGGATTTTGATTGTTTTCATCAGAGATAAATTG  197

seq1  ATTCAGGTATTTTATCTGCTGTAAATATTACAGAGTGCACACATGTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTATTTTATCTGCTGTAAATATTACAGAGTGCACACATGTATTG  247

seq1  GAAGAGCTCATATCTTTAAAATATTTAAAGATCAAATTACATAATTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTCATATCTTTAAAATATTTAAAGATCAAATTACATAATTAATA  297

seq1  TATAATTGTACTATCAAACAATGAGTTTCAGGATACTGAAAAACCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGTACTATCAAACAATGAGTTTCAGGATACTGAAAAACCTCAGA  347

seq1  TGTAACACTTACCTCTTTATTTCTACCTTTTAATATTTTCTGATATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACACTTACCTCTTTATTTCTACCTTTTAATATTTTCTGATATTAAA  397

seq1  ATTGAAAAAAAAACAATAAACCAAAAGTTTTTGTCATTTCCAAATCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAAAAAACAATAAACCAAAAGTTTTTGTCATTTCCAAATCTTGT  447

seq1  TTTTATCAGTTTGTGTCCTTTTACCACATAAAGTATTCTGAAGATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCAGTTTGTGTCCTTTTACCACATAAAGTATTCTGAAGATATTTT  497

seq1  CAACTATCAATTTATCAGCTATCAAGTACTGCTGGTATTACCTTTCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCAATTTATCAGCTATCAAGTACTGCTGGTATTACCTTTCCTAA  547

seq1  TTTACAGAAATACAGGATTAGAGTATGATTGACTAAATTACTGAATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAATACAGGATTAGAGTATGATTGACTAAATTACTGAATTGTT  597

seq1  TGTTCACTAAGTGAAAGGGCCACTAATAGTTTCTTTCAAGGTCTCTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTAAGTGAAAGGGCCACTAATAGTTTCTTTCAAGGTCTCTTCCA  647

seq1  TATTTCCCACCCACATTGTTTACA-TTTTGAAATTTTGGTCACTTGAACT  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATTTCCCACCCACATTGTTTACATTTTTGAAATTTTGGTCACTTGAACT  697

seq1  CTAGAACTGTCTTCAATCTCAAAACATCTGAACCAAATGCTTTGTGTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTGTCTTCAATCTCAAAACATCTGAACCAAATGCTTTGTGTGGA  747

seq1  AGAAATGAGGTTGTGTCTTCAATTGTAGGATGAAGACAGAAACAGAGCTA  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-AATGAGGTTGTGTCTTCAATTGTAGGATGAAGACAGAAACAGAGCTA  796

seq1  TGTCATAAAATAGCATTTTTAGTGATGG-TTTGCAGG-TTGTCTGCATCA  847
      |||||||||||||||||||||||||||| |||||||| ||||||||||| 
seq2  TGTCATAAAATAGCATTTTTAGTGATGGTTTTGCAGGTTTGTCTGCATCC  846

seq1  CCTA-TTCAACTGTATATTTCAATATCCTCTAAAATGGAATTAAACCAAG  896
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCAACTGTATATTTCAATATCCTCTAAAATGGAATTAAACCAAG  896

seq1  TGG--AAAATGATC-TTGCTGAAATTCGTG----TTCTTCTCTCACCTAC  939
      |||  ||| ||||| |||||||||||||||    |||||||| |||||||
seq2  TGGGAAAATTGATCTTTGCTGAAATTCGTGTTTCTTCTTCTC-CACCTAC  945

seq1  CACAGGTGGACATTT-GAAAGGCAGTCTTCAAATTTGGCTCCATAAGTTA  988
      |||||  | |||||| ||||||||||||||||||||||||||||||||||
seq2  CACAGTGGAACATTTGGAAAGGCAGTCTTCAAATTTGGCTCCATAAGTTA  995

seq1  TTTA--CTGCACTTGGTAGGAAGATCGAAATGATACAGTCCATTGTACTA  1036
      ||||  |||||||||||||| |||||||||||||||||||||||||||| 
seq2  TTTAACCTGCACTTGGTAGG-AGATCGAAATGATACAGTCCATTGTACTT  1044

seq1  AAC-ATGTAAATTACTTTTGAAACATTTTGGTGTTGTGCATGA-GCCATT  1084
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAATGTAAATTACTTTTGAAACATTTTGGTGTTGTGCATGAGGCCATT  1094

seq1  TAAAAT  1090
       |||||
seq2  AAAAAT  1100