BAC Information

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BAC

Clone NameB6Ng01-005L16
Chromosome12 (Build37)
Map Location 33,719,911 - 33,720,427
singlet/doubletsinglet
Overlap gene1110049B09Rik
Upstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109
Downstream geneAtxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L16.bB6Ng01-005L16.g
ACCDH842788DH842789
length511694
definitionDH842788|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L16, 5' end.DH842789|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
atatatttccccggtcactagagggcagataataaagcaatcatgggaaa
caaaaaattaaacaattctgtttgcacccacgtctcctctgttctgtgct
gatgactggggaggggtgaggaaggctgggagatgtaaccccacccccca
ccccgaggtgaaaagcagtttgtgaggagcccagacagcctttccatgcc
cgcctctccgccaagctgtgcagcccagacacttggggcgtctctggata
ggaaggtttgcaggctcagcaagatgagagggccatggaaatttcctcat
tccttgtgaccatccaataaattaggttcaatttctagtggggttaccca
ttaggatctgatttatttttgttttaaaacgattcttgtatccaccgtaa
gaaaaggaattcattaaataagtgcagatgtcattgaatccaccgggctg
gcagagagtgtagacacagacaaactgttcgggggatgaggaggggctgc
tattttaattg
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctttgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggcattgcagaaattactgccac
tatcaaggacttgaaagacgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattatcgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttcgttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaattagcaaccactttgggactcattgggtacacatatgcgtatcaga
ggatggggaaatatatccaaccaaaattcaaggaccatctacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33719911_33720427
seq2: B6Ng01-005L16.b_46_562

seq1  GAATTCATATATTTCCCCGGTCACTAGAGGGCAGATAATAAAGCAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATTTCCCCGGTCACTAGAGGGCAGATAATAAAGCAATCAT  50

seq1  GGGAAACAAAAAATTAAACAATTCTGTTTGCACCCACGTCTCCTCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAAAAAATTAAACAATTCTGTTTGCACCCACGTCTCCTCTGTTC  100

seq1  TGTGCTGATGACTGGGGAGGGGTGAGGAAGGCTGGGAGATGTAACCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGATGACTGGGGAGGGGTGAGGAAGGCTGGGAGATGTAACCCCAC  150

seq1  CCCCCACCCCGAGGTGAAAAGCAGTTTGTGAGGAGCCCAGACAGCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCGAGGTGAAAAGCAGTTTGTGAGGAGCCCAGACAGCCTTTC  200

seq1  CATGCCCGCCTCTCCGCCAAGCTGTGCAGCCCAGACACTTGGGGCGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCGCCTCTCCGCCAAGCTGTGCAGCCCAGACACTTGGGGCGTCTC  250

seq1  TGGATAGGAAGGTTTGCAGGCTCAGCAAGATGAGAGGGCCATGGAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGGAAGGTTTGCAGGCTCAGCAAGATGAGAGGGCCATGGAAATTT  300

seq1  CCTCATTCCTTGTGACCATCCAATAAATTAGGTTCAATTTCTAGTGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCCTTGTGACCATCCAATAAATTAGGTTCAATTTCTAGTGGGGT  350

seq1  TACCCATTAGGATCTGATTTATTTTTGTTTTAAAACGATTCTTGTATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTAGGATCTGATTTATTTTTGTTTTAAAACGATTCTTGTATCCA  400

seq1  CCGTAAGAAAAGGAATTCATTAAATAAGTGCAGAGGTCATTGAATCCACC  450
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCGTAAGAAAAGGAATTCATTAAATAAGTGCAGATGTCATTGAATCCACC  450

seq1  GGGCTGGCAGAGAGTGTAGACACAGACAAACTGTTCGGGGGATGAGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCAGAGAGTGTAGACACAGACAAACTGTTCGGGGGATGAGGAGG  500

seq1  GGCTGCCATTTTAATTG  517
      |||||| ||||||||||
seq2  GGCTGCTATTTTAATTG  517