BAC Information

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BAC

Clone NameB6Ng01-006A14
Chromosome12 (Build37)
Map Location 96,188,855 - 96,341,210
singlet/doubletdoublet
Overlap geneLOC100039603
Upstream geneEG633639, LOC217786
Downstream geneLOC667688, Flrt2, 1700019M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006A14.bB6Ng01-006A14.g
ACCDH843006DH843007
length1,123355
definitionDH843006|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A14, 5' end.DH843007|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,340,080 - 96,341,210)(96,188,855 - 96,189,634)
sequence
gaattcatctgcatatgtgaatgtgtttatgttccctgccatgtatgctt
tgagttggtgaacacagatgccttaacgtggcttgaaaacatggcttttt
tttttaaattggaatttctttctgcaccctgctgctcttcattctcaatg
gaaacatccacctaaaaagaaagataattatgagattcacttattagctg
tagctagagattgtgtgacttcacacagtggctggataactttactgggt
tttgagtctttatgaaagaacttacacatttcagaccgaagttatttccc
aaggcctttgttccatttagtgtcttcaaaggaatagatggaggatcaga
gctgctcatttctcagttttcttctcccagtcttgttactacaaatgggt
cccacagagacccttgaaattgagctactctatggaaaagaatgtgcaga
acctctacttgtgcctagccatacacgctcttcaaggatcaagtcgtttc
ccatatgaacaacagaaagtatttttaaaaattgaatacaaacaaagatc
cttcattctagatccatgtgtatcatctttgtttcctgggaaggaaatat
cataatgattcccttcaacgtaatgagaatgagacatttgcatcaaactc
attgtcagctctggcaatatgctttgattgctgtttctattatttacagc
tgtgtaacaaattgttccttagctaagtgtctctacacaccagttgtgct
atctgttcaagattgcagaagccagcagtgttcagaggccaattatatgg
tttatctcttcgactttatgccatataaaggcacaagcatggctggaagt
tctgttgtgagcacattgatatctcagaaatgtgactggtgatgaaatac
acacatagtctaagttgtatattctctttcaggaattcttttgtgtgtga
ctcactgtatttcttctcgtatgatggtagcttgagtttaggaaagatat
ttcatgaagagacaggagatacttcagcatccacaaatcatgaagacctc
atgcaataacccagaagtggttaatttctagaggccaaagcaggttctct
acaatcttttctaagactggttt
gaattcatttaaacaaatagatgaaaagttaaggacgtagcagaatgaaa
atgaagaagagataaaggttttaaaattatgagaacaatttttaagaaaa
ataggttatactgagtagagataaacaaaaatcaataaataatattaact
tactatgttaaacaataagtgataagttaatgaaaaaatatcaattactg
attcacagttgcaaaatcttaacaagaacatgacaattttcacattaaat
tgccataacgttcaatatatatatatatatatatatatatatatatatat
atatatatatatttatggttatagggctgttgcgtgtgtgtggacgtgtt
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96340080_96341210
seq2: B6Ng01-006A14.b_45_1167 (reverse)

seq1  AAACAAGTCTTTAGAAAAGATATGTAGAGCACATTGCTTTGTGCTCTAGA  50
      |||| |||| ||||||||||| ||||||| ||  |||||||  |||||||
seq2  AAACCAGTC-TTAGAAAAGAT-TGTAGAGAAC-CTGCTTTGGCCTCTAGA  47

seq1  AATTAA-CACTTCTGTGTTATTGCACTGAGGTCTTTCATGATTTTGTGGA  99
      |||||| |||||||| ||||||||| ||||||| ||||||| ||||||||
seq2  AATTAACCACTTCTGGGTTATTGCA-TGAGGTC-TTCATGA-TTTGTGGA  94

seq1  TGCTGAAGTATCTCCTGTCCTCTTTCATGAAATTATCTTTCCTAAACTCA  149
      |||||||||||||||||| ||| ||||||||| |||||||||||||||||
seq2  TGCTGAAGTATCTCCTGT-CTC-TTCATGAAA-TATCTTTCCTAAACTCA  141

seq1  AGCTACCATCATACGAGGAAGAAATACAGTGAGTCACACACAAAAGAATT  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCTACCATCATACGA-GAAGAAATACAGTGAGTCACACACAAAAGAATT  190

seq1  CCTGAAAGAGAATATACAACTTAGACTATGTGTGTATTTCATCACCAGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGAGAATATACAACTTAGACTATGTGTGTATTTCATCACCAGTC  240

seq1  ACATTTCTGAGATATCAATGTGCTCACAACAGAACTTCCAGCCATGCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGAGATATCAATGTGCTCACAACAGAACTTCCAGCCATGCTTG  290

seq1  TGCC-TTATATGGCATAAAGTCGAAGAGATAAACCATATAATTGGCCTCT  348
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTATATGGCATAAAGTCGAAGAGATAAACCATATAATTGGCCTCT  340

seq1  GAACACTGCTGGCTTCTGCAATCTTGAACAGATAGCACAACTGGTGTGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGCTGGCTTCTGCAATCTTGAACAGATAGCACAACTGGTGTGTA  390

seq1  GAGACACTTAGCTAAGGAACAATTTGTTACACAGCTGTAAATAATAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTTAGCTAAGGAACAATTTGTTACACAGCTGTAAATAATAGAAA  440

seq1  CAGCAATCAAAGCATATTGCCAGAGCTGACAATGAGTTTGATGCAAATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCAAAGCATATTGCCAGAGCTGACAATGAGTTTGATGCAAATGT  490

seq1  CTCATTCTCATTACGTTGAAGGGAATCATTATGATATTTCCTTCCCAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTCATTACGTTGAAGGGAATCATTATGATATTTCCTTCCCAGGA  540

seq1  AACAAAGATGATACACATGGATCTAGAATGAAGGATCTTTGTTTGTATTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATGATACACATGGATCTAGAATGAAGGATCTTTGTTTGTATTC  590

seq1  AATTTTTAAAAATACTTTCTGTTGTTCATATGGGAAACGACTTGATCCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAAAATACTTTCTGTTGTTCATATGGGAAACGACTTGATCCTT  640

seq1  GAAGAGCGTGTATGGCTAGGCACAAGTAGAGGTTCTGCACATTCTTTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCGTGTATGGCTAGGCACAAGTAGAGGTTCTGCACATTCTTTTCC  690

seq1  ATAGAGTAGCTCAATTTCAAGGGTCTCTGTGGGACCCATTTGTAGTAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTAGCTCAATTTCAAGGGTCTCTGTGGGACCCATTTGTAGTAACA  740

seq1  AGACTGGGAGAAGAAAACTGAGAAATGAGCAGCTCTGATCCTCCATCTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGGAGAAGAAAACTGAGAAATGAGCAGCTCTGATCCTCCATCTAT  790

seq1  TCCTTTGAAGACACTAAATGGAACAAAGGCCTTGGGAAATAACTTCGGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAAGACACTAAATGGAACAAAGGCCTTGGGAAATAACTTCGGTC  840

seq1  TGAAATGTGTAAGTTCTTTCATAAAGACTCAAAACCCAGTAAAGTTATCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTGTAAGTTCTTTCATAAAGACTCAAAACCCAGTAAAGTTATCC  890

seq1  AGCCACTGTGTGAAGTCACACAATCTCTAGCTACAGCTAATAAGTGAATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGTGTGAAGTCACACAATCTCTAGCTACAGCTAATAAGTGAATC  940

seq1  TCATAATTATCTTTCTTTTTAGGTGGATGTTTCCATTGAGAATGAAGAGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTATCTTTCTTTTTAGGTGGATGTTTCCATTGAGAATGAAGAGC  990

seq1  AGCAGGGTGCAGAAAGAAATTCCAATTTAAAAAAAAAAGCCATGTTTTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTGCAGAAAGAAATTCCAATTTAAAAAAAAAAGCCATGTTTTCA  1040

seq1  AGCCACGTTAAGGCATCTGTGTTCACCAACTCAAAGCATACATGGCAGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGTTAAGGCATCTGTGTTCACCAACTCAAAGCATACATGGCAGGG  1090

seq1  AACATAAACACATTCACATATGCAGATGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  AACATAAACACATTCACATATGCAGATGAATTC  1123

seq1: chr12_96188855_96189634
seq2: B6Ng01-006A14.g_63_832

seq1  GAATTCATTTAAACAAATAGATGAAAAGTTAAGGACGTAGCAGAATGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAAACAAATAGATGAAAAGTTAAGGACGTAGCAGAATGAAA  50

seq1  ATGAAGAAGAGATAAAGGTTTTAAAATTATGAGAACAATTTTTAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAGAGATAAAGGTTTTAAAATTATGAGAACAATTTTTAAGAAAA  100

seq1  ATAGGTTATACTGAGTAGAGATAAACAAAAATCAATAAATAATATTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTATACTGAGTAGAGATAAACAAAAATCAATAAATAATATTAACT  150

seq1  TACTATGTTAAACAATAAGTGATAAGTTAATGAAAAAATATCAATTACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTTAAACAATAAGTGATAAGTTAATGAAAAAATATCAATTACTG  200

seq1  ATTCACAGTTGCAAAATCTTAACAAGAACATGACAATTTTCACATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTTGCAAAATCTTAACAAGAACATGACAATTTTCACATTAAAT  250

seq1  TGCCATAACGTTCAATATATATATATATATATATATATATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAACGTTCAATATATATATATATATATATATATATATATATATAT  300

seq1  ATATATATATATTTATGTTTAAAAGCCTGTTACATGTTTCAAAACTTTTT  350
      ||||||||||||||||| ||| | | ||||| | ||| |    || | ||
seq2  ATATATATATATTTATGGTTATAGGGCTGTTGCGTGTGTGTGGACGTGTT  350

seq1  AGTTCCTTGTTTACAACTTGTATAGGAGGATAGCCAGACATTTTACAGTG  400
       ||                    ||   || ||  ||| |||||    | 
seq2  TGTGTNNNNNNNNNNNNNNNNNGAGAGAGAGAGAGAGAGATTTTTATATA  400

seq1  CATCTCACTATCACTATAGCATGCACTATATTTCATGTTATTCTTTATTT  450
      |||||| |||||  |||| |||| | | | | |  | || || |||||||
seq2  CATCTCTCTATCTGTATATCATGGAGTGTGTGTGTTTTTGTTTTTTATTT  450

seq1  TCATAATATTAAGAAATTCAGAGAAATCTCTAGTTTGTCTAACATTTAAG  500
      | ||| | ||||||| | || | |||||||||||||||||||||| ||||
seq2  TTATATTTTTAAGAAGTGCATAAAAATCTCTAGTTTGTCTAACATCTAAG  500

seq1  AACTAGTCTAATTAATGTTATCAAGTGGAGACTTTAGAAGTCTGTATTTG  550
      ||| | ||||  ||    ||||||||  | ||| |  || |||||  | |
seq2  AACAAATCTATCTATCTCTATCAAGTTCACACTCT-CAACTCTGTCATCG  549

seq1  ATA-------GTCTATTGATGTCTACTGCCCTTGCCAACATAAGATTTGA  593
      |||       || |||  |||| ||       || |  ||| |  || ||
seq2  ATACATATATGTGTATATATGTATA-------TGTC-GCAT-ATCTTAGA  590

seq1  GTGGAACAATTCACTATGAAATCAGAAACTGACAGAAAACTCTTTTTAAC  643
      |||  |||  |   |||  |  ||||  |   |       ||| | |  |
seq2  GTGAGACATATATATATACACACAGAGGCGCGCGCGGGCGTCTCTCT-CC  639

seq1  CCCTTGAATAATTGCAGAATTAATAAAGCAGAAGGAAAGGCTTTGACTTG  693
      ||||||    | ||||||||| ||| ||    | | |||   |  | |||
seq2  CCCTTG-GCGAGTGCAGAATT-ATATAGATATATGTAAGATATATATTTG  687

seq1  CCTGCTATCTGAAATATTTCATGTGAAAAAGCTATTTTACGCACATTGTC  743
       |||||||||||||||||||||||||||||||||  |||| ||||||| |
seq2  TCTGCTATCTGAAATATTTCATGTGAAAAAGCTA--TTACTCACATTGGC  735

seq1  CCCATCCTTTGAAAGAGCAATCAGAAAATAATTGCAG  780
      ||||||| |||||||||||||||| ||||||||||||
seq2  CCCATCC-TTGAAAGAGCAATCAG-AAATAATTGCAG  770