BAC Information

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BAC

Clone NameB6Ng01-007D22
Chromosome12 (Build37)
Map Location 76,120,231 - 76,219,877
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneSyt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007D22.bB6Ng01-007D22.g
ACCDH843876DH843877
length1,045476
definitionDH843876|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D22, 5' end.DH843877|Mus musculus domesticus DNA, BAC clone: B6Ng01-007D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,120,231 - 76,121,289)(76,219,396 - 76,219,877)
sequence
gaattccctcagagtagttaaaatgttctaagcaatgtatcagaaatatg
atgaaaaaaaacccagcacaatataaaaactgatcattaaataacaacaa
atttggcaaagtgttctgaaagggctaatgaggtcaaaactaaataagct
gtccttatttcccactgaaatggatccacattaaaatgctggctcaagcc
tcactgttactaactttaagctgaccctgccaatccccctcttctctcaa
gcagggctacctcctctgcttctgatcctgctctcctctcctcccctttc
tgaggtgccctcaccactaatcacttcaactggcagcttctgggaagaaa
aggaggcagcttcatatctaccttataatgatgggattaaggatttattc
caccagattcagttttacttcctaaagtcctttctattcaaggagcaagg
tctgtggccttcagctccttgtctacacattggaatgcactctgtgacaa
aatctacccatttgtaggatgccatgtagcatgtgaattcttgtgacttc
cctgtttatatgcaaggacatcaacattataagtgcctccacggtcatat
gatttaggatgctgtgtctccctctcaaacgtcctgatgtcattcccccc
caacccgtttttgtttgtttgtttgtttgttttttttgttttttttttgt
tttgtttttttttctgagacagggtttctctgtgtagccctggctgtcct
ggaactcactttgtagaccaggctggcgtctaactcagaaatctgcctgc
ctctgcctcctaaatgctgggattaaaggtgtgtgccaccaccacctggc
ctgatgtcattcctaaaggtatcatggcatcttcttccagcctagatata
gtactcttccctagtccacttcttatagtcatatgactgagtacaaaata
caaacgcaggctctttgctagactgcatgggtctttcttgctagcctgta
taagatattagtggatctgagtttaaatgaagttaattctgaaaa
tatttctggaatccatatggaagcagagaactgacttctgtagattttct
ttgacctccacatgtatgtcatggcataactgcaaccccaaatgtcatac
acacacacacacacacacacacacacacacacacacacacacacacacag
agagagagagagagagagagagagagatccaaccaaacaatgattgcttc
atttgtaaaatgttgtgaattaactgcgtaaggaggagaaagataccatt
aaatccatatgtttattgatttacattgctagagaaagatgagctgaggc
atatcttaattagctataaataccaattctggtttagagagggctaggaa
ataaagtctattccttgattttagagttcagttttcctaacaaagagacc
tagtacagattttcttttttctgtttagtttttcttttctctcctctctc
ctctcctctcctctcctctccactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76120231_76121289
seq2: B6Ng01-007D22.b_43_1087

seq1  GAATTCCCTCAGAGTAGTTAAAATGTTCTAAGCAATGTATCAGAAATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGAGTAGTTAAAATGTTCTAAGCAATGTATCAGAAATATG  50

seq1  ATGAAAAAAAACCCAGCACAATATAAAAACTGATCATTAAATAACAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAAACCCAGCACAATATAAAAACTGATCATTAAATAACAACAA  100

seq1  ATTTGGCAAAGTGTTCTGAAAGGGCTAATGAGGTCAAAACTAAATAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAAAGTGTTCTGAAAGGGCTAATGAGGTCAAAACTAAATAAGCT  150

seq1  GTCCTTATTTCCCACTGAAATGGATCCACATTAAAATGCTGGCTCAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATTTCCCACTGAAATGGATCCACATTAAAATGCTGGCTCAAGCC  200

seq1  TCACTGTTACTAACTTTAAGCTGACCCTGCCAATCCCCCTCTTCTCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTACTAACTTTAAGCTGACCCTGCCAATCCCCCTCTTCTCTCAA  250

seq1  GCAGGGCTACCTCCTCTGCTTCTGATCCTGCTCTCCTCTCCTCCCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTACCTCCTCTGCTTCTGATCCTGCTCTCCTCTCCTCCCCTTTC  300

seq1  TGAGGTGCCCTCACCACTAATCACTTCAACTGGCAGCTTCTGGGAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGCCCTCACCACTAATCACTTCAACTGGCAGCTTCTGGGAAGAAA  350

seq1  AGGAGGCAGCTTCATATCTACCTTATAATGATGGGATTAAGGATTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGCTTCATATCTACCTTATAATGATGGGATTAAGGATTTATTC  400

seq1  CACCAGATTCAGTTTTACTTCCTAAAGTCCTTTCTATTCAAGGAGCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGATTCAGTTTTACTTCCTAAAGTCCTTTCTATTCAAGGAGCAAGG  450

seq1  TCTGTGGCCTTCAGCTCCTTGTCTACACATTGGAATGCACTCTGTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCCTTCAGCTCCTTGTCTACACATTGGAATGCACTCTGTGACAA  500

seq1  AATCTACCCATTTGTAGGATGCCATGTAGCATGTGAATTCTTGTGACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACCCATTTGTAGGATGCCATGTAGCATGTGAATTCTTGTGACTTC  550

seq1  CCTGTTTATATGCAAGGACATCAACATTATAAGTGCCTCCACGGTCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTATATGCAAGGACATCAACATTATAAGTGCCTCCACGGTCATAT  600

seq1  GATTTAGGATGCTGTGTCTCCCTCTCAAACGTCCTGATGTCATTCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGATGCTGTGTCTCCCTCTCAAACGTCCTGATGTCATTCCCCCC  650

seq1  CAACCCGTTTTTGTTTGTTTGTTTGTTTGTTTTTTTTGTTTTTTTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCGTTTTTGTTTGTTTGTTTGTTTGTTTTTTTTGTTTTTTTTTTGT  700

seq1  TTTGTTTTTTTTTCTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTCTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT  750

seq1  GGAACTCACTTTGTAGACCAGGCTGGCGTCTAACTCAGAAATCTGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGACCAGGCTGGCGTCTAACTCAGAAATCTGCCTGC  800

seq1  CTCTGCCTCCTAAATGCTGGGATTAAAGGTGTGTGCCACCACCACCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCTAAATGCTGGGATTAAAGGTGTGTGCCACCACCACCTGGC  850

seq1  CTGATGTCATTCCTAAAGGTATCATGGCATCTTCTTCCAGCCTAGAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGATGTCATTCCTAAAGGTATCATGGCATCTTCTTCCAGCCTAG-ATAT  899

seq1  AGTACTCTTCCCTAGTCCACTTCTTATAGTCATATGACTGAGTACAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCTTCCCTAGTCCACTTCTTATAGTCATATGACTGAGTACAAAAT  949

seq1  ACAAACGCAAGGCTCTTTGCTAGACTGCCATGGGTTCTTTCTTTGCTAGG  1000
      |||||||| |||||||||||||||||| |||||| |||||| |||||| |
seq2  ACAAACGC-AGGCTCTTTGCTAGACTG-CATGGG-TCTTTC-TTGCTA-G  994

seq1  CCTGTATACAGATTAATTAAGTGGATTCTGAGTTTAAAATGGAGAGTAAA  1050
      |||||||| ||||  ||| |||||| ||||||||| |||||   ||| ||
seq2  CCTGTATA-AGAT--ATT-AGTGGA-TCTGAGTTT-AAATG--AAGTTAA  1036

seq1  TTCTGAAAA  1059
      |||||||||
seq2  TTCTGAAAA  1045

seq1: chr12_76219396_76219877
seq2: B6Ng01-007D22.g_68_549 (reverse)

seq1  GGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGAGAAAAGAAAAACT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAGAGGAGAGGAGAGGAGAGGAGAGAGGAGAGAAAAGAAAAACT  50

seq1  AAACAGAAAAAAGAAAATCTGTACTAGGTCTCTTTGTTAGGAAAACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAAAAGAAAATCTGTACTAGGTCTCTTTGTTAGGAAAACTGAA  100

seq1  CTCTAAAATCAAGGAATAGACTTTATTTCCTAGCCCTCTCTAAACCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAATCAAGGAATAGACTTTATTTCCTAGCCCTCTCTAAACCAGAA  150

seq1  TTGGTATTTATAGCTAATTAAGATATGCCTCAGCTCATCTTTCTCTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTTATAGCTAATTAAGATATGCCTCAGCTCATCTTTCTCTAGCA  200

seq1  ATGTAAATCAATAAACATATGGATTTAATGGTATCTTTCTCCTCCTTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATCAATAAACATATGGATTTAATGGTATCTTTCTCCTCCTTACG  250

seq1  CAGTTAATTCACAACATTTTACAAATGAAGCAATCATTGTTTGGTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAATTCACAACATTTTACAAATGAAGCAATCATTGTTTGGTTGGAT  300

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTATGACATTTGGGGTTGCAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTATGACATTTGGGGTTGCAGTTA  400

seq1  TGCCATGACATACATGTGGAGGTCAAAGAAAATCTACAGAAGTCAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGACATACATGTGGAGGTCAAAGAAAATCTACAGAAGTCAGTTCT  450

seq1  CTGCTTCCATATGGATTCCAGAAATAGAATTC  482
      ||||||||||||||||||||||||||||||||
seq2  CTGCTTCCATATGGATTCCAGAAATAGAATTC  482