BAC Information

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BAC

Clone NameB6Ng01-010N22
Chromosome12 (Build37)
Map Location 44,967,485 - 45,097,005
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507
Downstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010N22.bB6Ng01-010N22.g
ACCDH846414DH846415
length1,1181,086
definitionDH846414|Mus musculus domesticus DNA, BAC clone: B6Ng01-010N22, 5' end.DH846415|Mus musculus domesticus DNA, BAC clone: B6Ng01-010N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,095,875 - 45,097,005)(44,967,485 - 44,968,583)
sequence
gaattctttgttcagttcttcctatttgttttgaaatgttttctaaatta
tctaaattcttactagtgatgccccctgcagggttagtacattgcttcta
gatgaaacctggcatcagtttacaaaaatgatgaccttgcaagggtggga
ttgtggccagaagtgttatgattacgaatagtccagaaaagatacagaag
gcataacactttctcaaagagaaggtgttcctactagacatgatgacact
ggtcatctgaaagaaatgaaggtactaatactaaaggatgggactgtttc
attctccagaagcatagagaatgcactcacaaacatatgtagcatgtagt
cccgtgaacaccaaaccagggaatgcacaccatttacaaaatagctacca
tggccacagcactactctagaaaccatgagatgtaaaagaagaatatttt
ttttaaatttttattttttattagatattttctttatttatatttcaaat
gttatcccctttccttatttaggtagtctttatatgtttggggatatatt
ggtacagagtggcaagcgagcaaagacagattatagcaaggatatccact
aaaggtgcagagagtcccaccaaatgatacagacaaatgaaattatcgac
tcttagaatcaaatcattgagaccaatgaggcagtaagatacaaaatagc
tccagataatcagtgaagataggagattgaggacatgatgggcttgtggt
ctctattgttcatatctctctttttctagtctccaaatgttggcactgcc
ttggtctataacctcaaactcttttgcataatttccccagagatgcatac
tctttcaaatattcagttatgaagaatatgttgacagtgtttatctctaa
ctactttcctcttatattgccacaggctagtatatctacctcgtatcata
cttgatcatttggaatatctactaccaagaataagacattccaatctgag
ttataatttctttataaaacctcctcttaatctgtctaccctactttatt
atctggtggcaccaatgtattctttgtactaaaacgctgtgttggaagaa
ggaaaataatcttcgggc
gaattctggaaactgtgttgtgcccttgaattttgggacaggtagagaag
cttatccaccacgacaactctcaggtagaagctacagtgagtgaactcat
gcagacccaaacacttcagaacaagaattctagggaaaccttactcacaa
tgctcaatatttccactaattcatcagctgatgatgcaaaaatgaatgaa
aggggaatccactaccagaatgtaaataaaaaggaaagatttgactaaca
gatatttaacatcaaagccccatttcaaatgtgttaaatcaacttcattc
attatttaagttcagagacatcagcagcaaaccaaaataattagtgttcc
ttgatcattttgaatcaaattgatttgtaaagcatttttagaaggtccca
tttaactggtaaaaatggtgctaagtgtaaagatgctttaattaggacat
tcatttactcaattcaacagtaatttcagtaattgtaagcaattaataaa
agcagacacccctatggtagcccattgtgcttaaaccttaaaagaacatc
tctgaattagccagtcttgcaatgtaaaatcagattatttttttaataac
aaacagatgttctctttgccatttctggctttactttaccttaatatcag
ttgttaagttattaacctacattttagatacgtttttatttttccaagta
actcaaaatatgtgtgcatgtcttaaaatatagttgattcccttttctcc
tcttgatcatatgggggatgatgggtttcaagataacttgaccaattttt
ttccctaagtggttaccagagaaaggcaacagagagcattgaacgaagtc
atagtagccagttcccaagacttcaaagcccattacctaaaaatagccac
atgttctgctctgcacaggaagcacacagtgaaagatttctctttttacg
ttttattgggtacttttagacactcaccccattttcagaggataaatttc
ttgtattaaactctctctaatggtaatgagtaatgaaaagtgctcttcgt
tctgaatcaattggctactgtagtgttcataacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45095875_45097005
seq2: B6Ng01-010N22.b_48_1165 (reverse)

seq1  GCCCGAAGATATTTTATCCTTCTTTCCCAAACACAGCAGTCTAAGTACAA  50
      |||||||||| | || ||||||||   | |||||||| || | |||||||
seq2  GCCCGAAGAT-TATTTTCCTTCTT---CCAACACAGC-GTTTTAGTACAA  45

seq1  AGAATAACATGTGTGTCACCAGGTAATAAAGTAGGGTAGACAAGATTATA  100
      ||||| ||||  ||| |||||| |||||||||||||||||| |||||| |
seq2  AGAAT-ACATTGGTGCCACCAGATAATAAAGTAGGGTAGAC-AGATTA-A  92

seq1  GAAGGAGCTTTTATAAAGAAATTATAAACTCAGATTGGAATGTCTTATTC  150
      | ||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  G-AGGAGGTTTTATAAAGAAATTAT-AACTCAGATTGGAATGTCTTATTC  140

seq1  TTGGTAGTAAGATATT-CAAATGATCAAGTATGATACGAGGTTAGATATA  199
      |||||||| ||||||| |||||||||||||||||||||||| ||||||||
seq2  TTGGTAGT-AGATATTCCAAATGATCAAGTATGATACGAGG-TAGATATA  188

seq1  CTAGCCTGTTGGCAATATAAGAGGAAAGTAGTTAGAGATAAAACACTGTC  249
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CTAGCCTG-TGGCAATATAAGAGGAAAGTAGTTAGAGAT-AAACACTGTC  236

seq1  AACATATTCTTCATAACTGAATATTTGAAAGAGTATGCATCTCTGGGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTCTTCATAACTGAATATTTGAAAGAGTATGCATCTCTGGGGAA  286

seq1  ATTATGCAAAAGAGTTTGAGGTTATAGACCAAGGCAGTGCCAACATTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCAAAAGAGTTTGAGGTTATAGACCAAGGCAGTGCCAACATTTGG  336

seq1  AGACTAGAAAAAGAGAGATATGAACAATAGAGACCACAAGCCCATCATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGAAAAAGAGAGATATGAACAATAGAGACCACAAGCCCATCATGT  386

seq1  CCTCAATCTCCTATCTTCACTGATTATCTGGAGCTATTTTGTATCTTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATCTCCTATCTTCACTGATTATCTGGAGCTATTTTGTATCTTACT  436

seq1  GCCTCATTGGTCTCAATGATTTGATTCTAAGAGTCGATAATTTCATTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTGGTCTCAATGATTTGATTCTAAGAGTCGATAATTTCATTTGT  486

seq1  CTGTATCATTTGGTGGGACTCTCTGCACCTTTAGTGGATATCCTTGCTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCATTTGGTGGGACTCTCTGCACCTTTAGTGGATATCCTTGCTAT  536

seq1  AATCTGTCTTTGCTCGCTTGCCACTCTGTACCAATATATCCCCAAACATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCTTTGCTCGCTTGCCACTCTGTACCAATATATCCCCAAACATA  586

seq1  TAAAGACTACCTAAATAAGGAAAGGGGATAACATTTGAAATATAAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTACCTAAATAAGGAAAGGGGATAACATTTGAAATATAAATAAA  636

seq1  GAAAATATCTAATAAAAAATAAAAATTTAAAAAAAATATTCTTCTTTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCTAATAAAAAATAAAAATTTAAAAAAAATATTCTTCTTTTAC  686

seq1  ATCTCATGGTTTCTAGAGTAGTGCTGTGGCCATGGTAGCTATTTTGTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGGTTTCTAGAGTAGTGCTGTGGCCATGGTAGCTATTTTGTAAA  736

seq1  TGGTGTGCATTCCCTGGTTTGGTGTTCACGGGACTACATGCTACATATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCATTCCCTGGTTTGGTGTTCACGGGACTACATGCTACATATGT  786

seq1  TTGTGAGTGCATTCTCTATGCTTCTGGAGAATGAAACAGTCCCATCCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTGCATTCTCTATGCTTCTGGAGAATGAAACAGTCCCATCCTTT  836

seq1  AGTATTAGTACCTTCATTTCTTTCAGATGACCAGTGTCATCATGTCTAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAGTACCTTCATTTCTTTCAGATGACCAGTGTCATCATGTCTAGT  886

seq1  AGGAACACCTTCTCTTTGAGAAAGTGTTATGCCTTCTGTATCTTTTCTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACCTTCTCTTTGAGAAAGTGTTATGCCTTCTGTATCTTTTCTGG  936

seq1  ACTATTCGTAATCATAACACTTCTGGCCACAATCCCACCCTTGCAAGGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCGTAATCATAACACTTCTGGCCACAATCCCACCCTTGCAAGGTC  986

seq1  ATCATTTTTGTAAACTGATGCCAGGTTTCATCTAGAAGCAATGTACTAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTGTAAACTGATGCCAGGTTTCATCTAGAAGCAATGTACTAAC  1036

seq1  CCTGCAGGGGGCATCACTAGTAAGAATTTAGATAATTTAGAAAACATTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGGGGCATCACTAGTAAGAATTTAGATAATTTAGAAAACATTTC  1086

seq1  AAAACAAATAGGAAGAACTGAACAAAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  AAAACAAATAGGAAGAACTGAACAAAGAATTC  1118

seq1: chr12_44967485_44968583
seq2: B6Ng01-010N22.g_67_1152

seq1  GAATTCTGGAAACTGTGTTGTGCCCTTGAATTTTGGGACAGGTAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAACTGTGTTGTGCCCTTGAATTTTGGGACAGGTAGAGAAG  50

seq1  CTTATCCACCACGACAACTCTCAGGTAGAAGCTACAGTGAGTGAACTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCACCACGACAACTCTCAGGTAGAAGCTACAGTGAGTGAACTCAT  100

seq1  GCAGACCCAAACACTTCAGAACAAGAATTCTAGGGAAACCTTACTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCCAAACACTTCAGAACAAGAATTCTAGGGAAACCTTACTCACAA  150

seq1  TGCTCAATATTTCCACTAATTCATCAGCTGATGATGCAAAAATGAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATATTTCCACTAATTCATCAGCTGATGATGCAAAAATGAATGAA  200

seq1  AGGGGAATCCACTACCAGAATGTAAATAAAAAGGAAAGATTTGACTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATCCACTACCAGAATGTAAATAAAAAGGAAAGATTTGACTAACA  250

seq1  GATATTTAACATCAAAGCCCCATTTCAAATGTGTTAAATCAACTTCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAACATCAAAGCCCCATTTCAAATGTGTTAAATCAACTTCATTC  300

seq1  ATTATTTAAGTTCAGAGACATCAGCAGCAAACCAAAATAATTAGTGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAGTTCAGAGACATCAGCAGCAAACCAAAATAATTAGTGTTCC  350

seq1  TTGATCATTTTGAATCAAATTGATTTGTAAAGCATTTTTAGAAGGTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATTTTGAATCAAATTGATTTGTAAAGCATTTTTAGAAGGTCCCA  400

seq1  TTTAACTGGTAAAAATGGTGCTAAGTGTAAAGATGCTTTAATTAGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGGTAAAAATGGTGCTAAGTGTAAAGATGCTTTAATTAGGACAT  450

seq1  TCATTTACTCAATTCAACAGTAATTTCAGTAATTGTAAGCAATTAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACTCAATTCAACAGTAATTTCAGTAATTGTAAGCAATTAATAAA  500

seq1  AGCAGACACCCCTATGGTAGCCCATTGTGCTTAAACCTTAAAAGAACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACACCCCTATGGTAGCCCATTGTGCTTAAACCTTAAAAGAACATC  550

seq1  TCTGAATTAGCCAGTCTTGCAATGTAAAATCAGATTATTTTTTTAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTAGCCAGTCTTGCAATGTAAAATCAGATTATTTTTTTAATAAC  600

seq1  AAACAGATGTTCTCTTTGCCATTTCTGGCTTTACTTTACCTTAATATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGTTCTCTTTGCCATTTCTGGCTTTACTTTACCTTAATATCAG  650

seq1  TTGTTAAGTTATTAACCTACATTTTAGATACGTTTTTATTTTTCCAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGTTATTAACCTACATTTTAGATACGTTTTTATTTTTCCAAGTA  700

seq1  ACTCAAAATATGTGTGCATGTCTTAAAATATAGTTGATTCCCTTTTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAATATGTGTGCATGTCTTAAAATATAGTTGATTCCCTTTTCTCC  750

seq1  TCTTGATCATATGGGGGATGATGGGTTTCAAGATAACTTGACCAATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCATATGGGGGATGATGGGTTTCAAGATAACTTGACCAATTTTT  800

seq1  TTCCCTAAGTGGTTACCAGAGAAAGGCAACAGAGAGCATTGAACGAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAGTGGTTACCAGAGAAAGGCAACAGAGAGCATTGAACGAAGTC  850

seq1  ATAGTAGCCAGTTCCCAAGACTTCAAAGCCCATTACCTAAAAATAGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGCCAGTTCCCAAGACTTCAAAGCCCATTACCTAAAAATAGCCAC  900

seq1  AATGTTCTGCCCTGCACAGGAAGCACACAGTGAAAGATTTCTCCTTTTTT  950
       ||||||||| ||||||||||||||||||||||||||||||||  |||||
seq2  -ATGTTCTGCTCTGCACAGGAAGCACACAGTGAAAGATTTCTC--TTTTT  947

seq1  ACGTTTTTATTGGGTACTTTTAGACACTCACCCCATTTTCCAGAGGATAC  1000
      ||| ||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  ACG-TTTTATTGGGTACTTTTAGACACTCACCCCATTTT-CAGAGGATAA  995

seq1  ATTTCTCTGTTATTAAACTTCTCTCTAGTGGTAATGAGTAATGAAGAGTG  1050
      |||||| || |||||||| |||||||| ||||||||||||||||| ||||
seq2  ATTTCT-TG-TATTAAAC-TCTCTCTAATGGTAATGAGTAATGAAAAGTG  1042

seq1  TCTC-TCGTTCTCTGACACTCATTCTGGGCTACTGCA-TGTTCACAACAT  1098
       ||| |||||||     | |||   | |||||||| | |||||| |||||
seq2  -CTCTTCGTTCT----GAATCA--ATTGGCTACTGTAGTGTTCATAACAT  1085

seq1  C  1099
      |
seq2  C  1086