BAC Information

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BAC

Clone NameB6Ng01-011A17
Chromosome12 (Build37)
Map Location 31,361,976 - 31,579,872
singlet/doubletdoublet
Overlap geneLOC100043055, Acp1
Upstream geneMyt1l, Pxdn, Tpo, Sntg2, Tmem18
Downstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A17.bB6Ng01-011A17.g
ACCDH846538DH846539
length9731,025
definitionDH846538|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A17, 5' end.DH846539|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,361,976 - 31,362,864)(31,578,837 - 31,579,872)
sequence
gaattctcagtttttctctcagtgtgcatagtaggccaacatcttgaagt
aagttttcatggtttcccctgaagcatatatgcattccatatcttcaaca
tcatccccagtaattaaaaaatgagtatgtatatatgtacatatatgtgt
gagagagaaaatgtgtgtgttagacaaagacagacagacatgcaggcagg
cagacagacagagacagagacagagacagagacagaggagtgatctgaac
ctgatatttttcttaaaagctttcagcccgtgaaagcgaacggaaggtag
taatgattgcagaaagatgatcttttagaaaagcacatcccatagctgga
tgatagctggaatttattgtttgtcccctgattctcagtatcaacttaca
gaacctttgcagcaacttttgaaataaaaaatcagcataaattctcctgc
tttattctttttcaacatcaatttggattctgagtcatttccatttccat
atagattttaaaatcaatttgtcaaattctttaaaaaaaataaaagcccg
ttagaattttgagactttattaaattttccaattaccctagagaatatca
catcatcaacattattaaatttcccaagccatgagtgttagggatccttt
tatatatttgtattccctgtaattttcctcaacaatgttcagtatctgtt
tattacttaaatcttgtagttgtaaaattaagtgtttcattaattttgta
ctatctttatagagttcttaaaatttccactttgttaatttatttcttgt
tattaccatatttgtatattggtatatgaagatttgtgtcatgaaatcta
atttttaatttatcatagtttattttttagatttttattttttttagatc
agattatttgcaaataaacatatctccctctggtttttgtttgtttgttt
cttttttgacctgtattactatt
gaattcaactgggaagttatcaaatacaactgagatacaaatccagtgtc
tgcctgcttcttactgacaagtgaacaagatacctaaatgttgcctccat
gtgcctttttatttgcttgagtgtgaagtttgggctctcagcctctgtgt
tagaaagtaaagtgatgagatggatacacacaatgctgtgttggatggcg
atgggtgtctaattgagagactccaggcactatccttatccttgggcctt
cttcatgtagctggtgctccctacccgcttcccagctgaaaaggtggtaa
ctgtctgtcttagcctgtcttagctcaggtcactactggtgagctccagt
cacgcagaacttgtagttagaagagccatcctgacgtctgaaaggaagga
agcccaggggcctaggaatatgcagtctcttcttggccagggctcctctc
tcgaaggaggaaagcttacacctgactcttccagaagaaagcagctatcc
cagcaccctctcacagaaaggccatgatgtcccagcaaaggcagacactt
cagctgcctttttgggctcctgtggggttttggtcagagtcttcacaaaa
ttaaaaccgaggaagggagaggacaggtagtcagccacaaggaggaaatg
gattaagtcaaagctctccaccctacttcagtgcttgcttcagaatctca
gatttctctttcaggtcataagatcctattgttttcttgaaattttacct
gtgtatcttacacgcagatccttggaatgtcaggttctgctttgttctac
ggctgtctcaaacagcacagtgtgtttataagggctcatgaacagagaaa
ttaactttttacattcaatcaattacatttgtttaaaatacagccattaa
attttaaactgttctcaggtgcttcttggtttgacattctcttacatcag
tagagatggtagatgtgagtattgatggctaatgagaccaagcgatcaga
gttatgtattcattctatgtcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31361976_31362864
seq2: B6Ng01-011A17.b_44_934

seq1  GAATTCTCAGTTTTTCTCTCAGTGTGCATAGTAGGCCAACATCTTGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTTTCTCTCAGTGTGCATAGTAGGCCAACATCTTGAAGT  50

seq1  AAGTTTTCATGGTTTCCCCTGAAGCATATATGCATTCCATATCTTCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCATGGTTTCCCCTGAAGCATATATGCATTCCATATCTTCAACA  100

seq1  TCATCCCCAGTAATTAAAAAATGAGTATGTATATATGTACATATATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCAGTAATTAAAAAATGAGTATGTATATATGTACATATATGTGT  150

seq1  GAGAGAGAAAATGTGTGTGTTAGACAAAGACAGACAGACATGCAGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAAATGTGTGTGTTAGACAAAGACAGACAGACATGCAGGCAGG  200

seq1  CAGACAGACAGAGACAGAGACAGAGACAGAGACAGAGGAGTGATCTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGAGACAGAGACAGAGACAGAGACAGAGGAGTGATCTGAAC  250

seq1  CTGATATTTTTCTTAAAAGCTTTCAGCCCGTGAAAGCGAACGGAAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTTTCTTAAAAGCTTTCAGCCCGTGAAAGCGAACGGAAGGTAG  300

seq1  TAATGATTGCAGAAAGATGATCTTTTAGAAAAGCACATCCCATAGCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTGCAGAAAGATGATCTTTTAGAAAAGCACATCCCATAGCTGGA  350

seq1  TGATAGCTGGAATTTATTGTTTGTCCCCTGATTCTCAGTATCAACTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTGGAATTTATTGTTTGTCCCCTGATTCTCAGTATCAACTTACA  400

seq1  GAACCTTTGCAGCAACTTTTGAAATAAAAAATCAGCATAAATTCTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTGCAGCAACTTTTGAAATAAAAAATCAGCATAAATTCTCCTGC  450

seq1  TTTATTCTTTTTCAACATCAATTTGGATTCTGAGTCATTTCCATTTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTTTTCAACATCAATTTGGATTCTGAGTCATTTCCATTTCCAT  500

seq1  ATAGATTTTAAAATCAATTTGTCAAATTCTTTAAAAAAAATAAAAGCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTTAAAATCAATTTGTCAAATTCTTTAAAAAAAATAAAAGCCCG  550

seq1  TTAGAATTTTGAGACTTTATTAAATTTTCCAATTACCCTAGAGAATATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTTGAGACTTTATTAAATTTTCCAATTACCCTAGAGAATATCA  600

seq1  CATCATCAACATTATTAAATTTCCCAAGCCATGAGTGTTAGGGATCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAACATTATTAAATTTCCCAAGCCATGAGTGTTAGGGATCCTTT  650

seq1  TATATATTTGTATTCCCTGTAATTTTCCTCAACAATGTTCAGTATCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGTATTCCCTGTAATTTTCCTCAACAATGTTCAGTATCTGTT  700

seq1  TATTACTTAAATCTTGTAGTTGTAAAATTAAGTGTTTCATTAATTTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTAAATCTTGTAGTTGTAAAATTAAGTGTTTCATTAATTTTGTA  750

seq1  CTATCTTTATAGAGTTCTTAAAATTTCCACTTTGTTAATTTATTTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTATAGAGTTCTTAAAATTTCCACTTTGTTAATTTATTTCTTGT  800

seq1  TATTACCATATTTGTATATTGGTATATGAAGA-TTGTGTCATGAAATCTA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATTACCATATTTGTATATTGGTATATGAAGATTTGTGTCATGAAATCTA  850

seq1  ATTTTTAATTTATCATAGTTTA-TTTTTAGAATTTTATTTT  889
      |||||||||||||||||||||| |||||||| |||||||||
seq2  ATTTTTAATTTATCATAGTTTATTTTTTAGATTTTTATTTT  891

seq1: chr12_31578837_31579872
seq2: B6Ng01-011A17.g_66_1090 (reverse)

seq1  ATGTGACTAAGTACTGAATAACATAAACTCCTGATCGCTTGGTCTCATTT  50
      |||||||  || | ||||| |||| |||| ||||||||||||||||| ||
seq2  ATGTGACATAG-AATGAAT-ACAT-AACT-CTGATCGCTTGGTCTCA-TT  45

seq1  AGCCATCAATACTCCACATCTACCATCTCTACCTGATTGTAAGAGAATGT  100
      ||||||||||||| ||||||||||||||||| |||| |||||||||||||
seq2  AGCCATCAATACT-CACATCTACCATCTCTA-CTGA-TGTAAGAGAATGT  92

seq1  CAAACCAAGAAGCACCCTGAGAACAGTTTTAAAATTTAATGGCTGTATTT  150
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  CAAACCAAGAAGCA-CCTGAGAACAG-TTTAAAATTTAATGGCTGTATTT  140

seq1  TAAACAAATGTAATTTGATTGAATGTAAAAAGTTAATTTCTCTGTTCATG  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATGTAA-TTGATTGAATGTAAAAAGTTAATTTCTCTGTTCATG  189

seq1  AGCCCTTATAAACACACTGTGCTGTTTGAGACAGCCGTAGAACAAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTATAAACACACTGTGCTGTTTGAGACAGCCGTAGAACAAAGCAG  239

seq1  AACCTGACATTCCAAGGATCTGCGTGTAAGATACACAGGTAAAATTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACATTCCAAGGATCTGCGTGTAAGATACACAGGTAAAATTTCAA  289

seq1  GAAAACAATAGGATCTTATGACCTGAAAGAGAAATCTGAGATTCTGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAATAGGATCTTATGACCTGAAAGAGAAATCTGAGATTCTGAAGC  339

seq1  AAGCACTGAAGTAGGGTGGAGAGCTTTGACTTAATCCATTTCCTCCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGAAGTAGGGTGGAGAGCTTTGACTTAATCCATTTCCTCCTTGT  389

seq1  GGCTGACTACCTGTCCTCTCCCTTCCTCGGTTTTAATTTTGTGAAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTACCTGTCCTCTCCCTTCCTCGGTTTTAATTTTGTGAAGACTC  439

seq1  TGACCAAAACCCCACAGGAGCCCAAAAAGGCAGCTGAAGTGTCTGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAAACCCCACAGGAGCCCAAAAAGGCAGCTGAAGTGTCTGCCTTT  489

seq1  GCTGGGACATCATGGCCTTTCTGTGAGAGGGTGCTGGGATAGCTGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACATCATGGCCTTTCTGTGAGAGGGTGCTGGGATAGCTGCTTTC  539

seq1  TTCTGGAAGAGTCAGGTGTAAGCTTTCCTCCTTCGAGAGAGGAGCCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGAGTCAGGTGTAAGCTTTCCTCCTTCGAGAGAGGAGCCCTGG  589

seq1  CCAAGAAGAGACTGCATATTCCTAGGCCCCTGGGCTTCCTTCCTTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGAGACTGCATATTCCTAGGCCCCTGGGCTTCCTTCCTTTCAGA  639

seq1  CGTCAGGATGGCTCTTCTAACTACAAGTTCTGCGTGACTGGAGCTCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGGATGGCTCTTCTAACTACAAGTTCTGCGTGACTGGAGCTCACCA  689

seq1  GTAGTGACCTGAGCTAAGACAGGCTAAGACAGACAGTTACCACCTTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGACCTGAGCTAAGACAGGCTAAGACAGACAGTTACCACCTTTTCA  739

seq1  GCTGGGAAGCGGGTAGGGAGCACCAGCTACATGAAGAAGGCCCAAGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAGCGGGTAGGGAGCACCAGCTACATGAAGAAGGCCCAAGGATA  789

seq1  AGGATAGTGCCTGGAGTCTCTCAATTAGACACCCATCGCCATCCAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGTGCCTGGAGTCTCTCAATTAGACACCCATCGCCATCCAACACA  839

seq1  GCATTGTGTGTATCCATCTCATCACTTTACTTTCTAACACAGAGGCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGTGTATCCATCTCATCACTTTACTTTCTAACACAGAGGCTGAG  889

seq1  AGCCCAAACTTCACACTCAAGCAAATAAAAAGGCACATGGAGGCAACATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAACTTCACACTCAAGCAAATAAAAAGGCACATGGAGGCAACATT  939

seq1  TAGGTATCTTGTTCACTTGTCAGTAAGAAGCAGGCAGACACTGGATTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATCTTGTTCACTTGTCAGTAAGAAGCAGGCAGACACTGGATTTGT  989

seq1  ATCTCAGTTGTATTTGATAACTTCCCAGTTGAATTC  1036
      ||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTTGTATTTGATAACTTCCCAGTTGAATTC  1025