BAC Information

Click to search

BAC

Clone NameB6Ng01-011A24
Chromosome12 (Build37)
Map Location 120,111,528 - 120,229,568
singlet/doubletdoublet
Overlap geneAbcb5
Upstream geneCdca7l, Dnahc11, Sp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8
Downstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A24.bB6Ng01-011A24.g
ACCDH846552DH846553
length686959
definitionDH846552|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A24, 5' end.DH846553|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,111,528 - 120,112,213)(120,229,036 - 120,229,568)
sequence
attttttgaagtatatgttgccaaaggaaggttcataaatcacctgttgg
ataggagctcccacgttacagcttccagaaagactgatacgtatacttct
agaatagccacaggttccagggatattcccagagactagagtatacctag
tattctgtcttgaagtcacatagaagatggtcaacctccccctcaagtaa
aataacacttactgatccccagtccattattgatccccaatgagagagtt
ggctgattgatacagaagtctacctgtagagatgggtacttggctctggg
ccaaatgtattcattcacacagatacctcacctgctgcctatttgatgag
catgcctactatgtgctagggctctaggtactggggaagtagtagtaata
caatgaaaaactccttatcctgagagtttgtactgtagctgacagataaa
ggcaccctagcaactcagaaagagaaggtgacacagagacagagtaatag
aatagagaaggattggggcagaaggcatctaggatgccatgggaaggaac
tctgggactacgccaaatgagacacaagcagatcctgagaacaagcaagt
ggaggaacaacaagaaaaaaggccacaagctgtggagatagatgttcagc
atgcagtgagagagagggaggggaagtttggagagg
gaattctgcacagtggctgcttctaatagttactctttccctgagagcta
tctttaagcctttgatgaaggctgcctctttagtcaaagtcctcaagagg
aaggtaaattgacttaattttttgttcttcattttttatattatccttta
tatctttatattatcctttgtatctttatattttatattatcctttgtat
ctttatattttagcttcctttctttttctcttttttatatttcttaagtt
acttattttcctgcgcatgtcttctttttcctttctctctgtttctgata
tgccttccgggtattcctacaaagtcactgcccttccttaacagctggtc
ccacacaaacccagcaacaattaccagacctactgcgtaagaaagcatac
ctctcagagacttaccttaatttctttatacttaccggtgccaccgttcc
tcagctgaagagttctgaatccacgcagttgaatccttctcagcagtctg
ttttgcaggaacacttcattacgggaacctttattaaccgctccttcccc
atgatacagttctgaatcctccctgtagcaggaggtctttgctcgtgcct
gaagatgtttcttgtcccgggttttcggcaccacttcttgcgcgcgccgg
actcgaccagcaagaacgaagctgcaacaggatccttctgcacacgttta
ttgggagagcttgattgcagaggtgaagagaccccaagcccagaattggt
gctgcttatataggcttaggagaggcgtgtctcacacccggattggttat
gcactatacctcatttgcatgttcctcatctgattggtactctctctcag
tacctcacagaacctcattatcatacctcatttgcatgtctcacatctga
ttggttatattctcaaaacctcattaatcatgcctgggccaggcagtgtc
ttgcaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120111528_120112213
seq2: B6Ng01-011A24.b_55_740

seq1  ATTTTTTGAAGTATATGTTGCCAAAGGAAGGTTCATAAATCACCTGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAAGTATATGTTGCCAAAGGAAGGTTCATAAATCACCTGTTGG  50

seq1  ATAGGAGCTCCCACGTTACAGCTTCCAGAAAGACTGATACGTATACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGCTCCCACGTTACAGCTTCCAGAAAGACTGATACGTATACTTCT  100

seq1  AGAATAGCCACAGGTTCCAGGGATATTCCCAGAGACTAGAGTATACCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGCCACAGGTTCCAGGGATATTCCCAGAGACTAGAGTATACCTAG  150

seq1  TATTCTGTCTTGAAGTCACATAGAAGATGGTCAACCTCCCCCTCAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTCTTGAAGTCACATAGAAGATGGTCAACCTCCCCCTCAAGTAA  200

seq1  AATAACACTTACTGATCCCCAGTCCATTATTGATCCCCAATGAGAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACTTACTGATCCCCAGTCCATTATTGATCCCCAATGAGAGAGTT  250

seq1  GGCTGATTGATACAGAAGTCTACCTGTAGAGATGGGTACTTGGCTCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTGATACAGAAGTCTACCTGTAGAGATGGGTACTTGGCTCTGGG  300

seq1  CCAAATGTATTCATTCACACAGATACCTCACCTGCTGCCTATTTGATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTATTCATTCACACAGATACCTCACCTGCTGCCTATTTGATGAG  350

seq1  CATGCCTACTATGTGCTAGGGCTCTAGGTACTGGGGAAGTAGTAGTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTACTATGTGCTAGGGCTCTAGGTACTGGGGAAGTAGTAGTAATA  400

seq1  CAATGAAAAACTCCTTATCCTGAGAGTTTGTACTGTAGCTGACAGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAAACTCCTTATCCTGAGAGTTTGTACTGTAGCTGACAGATAAA  450

seq1  GGCACCCTAGCAACTCAGAAAGAGAAGGTGACACAGAGACAGAGTAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTAGCAACTCAGAAAGAGAAGGTGACACAGAGACAGAGTAATAG  500

seq1  AATAGAGAAGGATTGGGGCAGAAGGCATCTAGGATGCCATGGGAAGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAAGGATTGGGGCAGAAGGCATCTAGGATGCCATGGGAAGGAAC  550

seq1  TCTGGGACTACGCCAAATGAGACACAAGCAGATCCTGAGAACAAGCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGACTACGCCAAATGAGACACAAGCAGATCCTGAGAACAAGCAAGT  600

seq1  GGAGGAACAACAAGAAAAAAGGCCACAAGCTGTGGAGATAGATGTTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACAACAAGAAAAAAGGCCACAAGCTGTGGAGATAGATGTTCAGC  650

seq1  ATGCAGTGAGAGAGAGGGAGGGGAAGTTTGGAGAGG  686
      ||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGAGAGAGAGGGAGGGGAAGTTTGGAGAGG  686

seq1: chr12_120229036_120229568
seq2: B6Ng01-011A24.g_66_598 (reverse)

seq1  TAAAGGTTCCCGTAATGAAGTGTTCCTGCAAAACAGACTGCTGAGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTCCCGTAATGAAGTGTTCCTGCAAAACAGACTGCTGAGAAGGA  50

seq1  TTCAACTGCGTGGATTCAGAACTCTTCAGCTGAGGAACGGTGGCACCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGCGTGGATTCAGAACTCTTCAGCTGAGGAACGGTGGCACCGGT  100

seq1  AAGTATAAAGAAATTAAGGTAAGTCTCTGAGAGGTATGCTTTCTTACGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAAAGAAATTAAGGTAAGTCTCTGAGAGGTATGCTTTCTTACGCA  150

seq1  GTAGGTCTGGTAATTGTTGCTGGGTTTGTGTGGGACCAGCTGTTAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCTGGTAATTGTTGCTGGGTTTGTGTGGGACCAGCTGTTAAGGAA  200

seq1  GGGCAGTGACTTTGTAGGAATACCCGGAAGGCATATCAGAAACAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGACTTTGTAGGAATACCCGGAAGGCATATCAGAAACAGAGAGA  250

seq1  AAGGAAAAAGAAGACATGCGCAGGAAAATAAGTAACTTAAGAAATATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAGAAGACATGCGCAGGAAAATAAGTAACTTAAGAAATATAAA  300

seq1  AAAGAGAAAAAGAAAGGAAGCTAAAATATAAAGATACAAAGGATAATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAAAGAAAGGAAGCTAAAATATAAAGATACAAAGGATAATATA  350

seq1  AAATATAAAGATACAAAGGATAATATAAAGATATAAAGGATAATATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAGATACAAAGGATAATATAAAGATATAAAGGATAATATAAAA  400

seq1  AATGAAGAACAAAAAATTAAGTCAATTTACCTTCCTCTTGAGGACTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAACAAAAAATTAAGTCAATTTACCTTCCTCTTGAGGACTTTGA  450

seq1  CTAAAGAGGCAGCCTTCATCAAAGGCTTAAAGATAGCTCTCAGGGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGGCAGCCTTCATCAAAGGCTTAAAGATAGCTCTCAGGGAAAGA  500

seq1  GTAACTATTAGAAGCAGCCACTGTGCAGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  GTAACTATTAGAAGCAGCCACTGTGCAGAATTC  533