BAC Information

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BAC

Clone NameB6Ng01-012D23
Chromosome12 (Build37)
Map Location 16,828,560 - 16,980,452
singlet/doubletdoublet
Overlap geneE2f6, Rock2
Upstream geneEG432636, LOC100043273, Lpin1, Ntsr2, Greb1
Downstream genePqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D23.bB6Ng01-012D23.g
ACCDH847392DH847393
length1,1921,170
definitionDH847392|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D23, 5' end.DH847393|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,828,560 - 16,829,757)(16,979,262 - 16,980,452)
sequence
gaattctttttgaaataattattttgaagcttttttttttttctgtttcc
cttcattgtaaggttgtattccataaaagctaagctattcttatacctgc
attcatgtaagagatagtgatgtgtgtagtggtgcacgccttcattccca
gcactcaggaggcagagaaacgcaggtctctaagttcaaggctagactgg
tctatgtagcacaggccagccagtgctaaacagtgagactttgcctccaa
aaacaaaacaaaacaacaacaacaaaacgaaggacggtgttgtggggtgg
tgatctgcccatcttgtcagatccttgaccaggtctcacactagcgtatg
taacctatcaggatattcacggcattcaagctttccatgaacagattgtc
attgcagtgaaggctccagaggaaaccagactggatgttccagctcccag
agaagtaggtagcgctgcactgcagagagggcttaaaaagggaggaggtg
ggttggccgccacagcagtgaccaccaagtcacttgttaccatgtgcttg
tcaagctctacaccttaactgtgagtgaggtaatccctgtaaccttggag
atgggagggtcagcccagagaggcaggagtgcacacagtgaccaccagga
ccagtgtaggacagggtggcttgcaggcgctctcagccatgttgctgctg
ttgggctgtaggagcgatcacactattggccttgggcttcaaattcaaaa
agtaatagctggcccagccagagcactggtgagctcgccgaagcctagga
atgagctggaacactgagtcacagatgtacagccttcctgagatcagcct
tggtgtcggctgctgctagctgctccagggaagtttgcgttgagtgtgat
tgtcatcagaaaggtcacttcgtgagaatagggtcaaaaccaaagccggt
gaccctttcttagcacagaccagggaagttctaacagcccggtgtcccag
ctgctcgtacccagcttctttcatggaggtagtgaggaataagtcacacc
cacccttctttctgttgtccccagcagaacacgtcagttgaaccctgtta
cctggacagtggatcgtagtcatgaggaactatagctttcttcaaccaat
caggtgtggacactggtgccgtctagttgatttggatttaga
gaattccaaagccaggaagatgttttcagatatcacctgtactaataggc
tccgatgaactaggtaagtaaggcaaggaatcttcttcagagtcaaagtc
aagaagcgtgtgagaactggagggcttagtggcaatactgagagaggtag
aggaccgctggtaggtgaaagacatggattccatagtgtgtgactgagtg
atatggactaaatacccacaagcaagaaagtgaggcagagaagagagaag
aaaaaagtgaaaacttaaaaaaacagataggcactacatgtgagttatac
tcctaaacatttagaatttatttacttgttcgtttttaatcaaacaagtc
caaaaggtcatgtgaatcccattctaagtaggatttcctttaaagaaatg
gcaaaccttttccttaaaagtaaagtcattcatggaatcaaagcaatcac
ctgacttaaatttaaggcaaatgcaagggctgaccaaggatgtgtacctg
gaaatccatcatcaggctcagcatcgcctggtccactgcctatactggaa
ctgtccataccaatatgcaaggcctggagctgtgaccgcagctgttcaat
gtcgctgtctttactgtccagggtcatctggagttctattcgaatttggc
tctcttcagctatttgctgtaagaaaatgtataacagatgaaatgtgcat
tgtaattatgagtcacagttcagtaataaatactaacaaaatgttctgca
aagataagaaaataattgttttctaaaacgttttcagtggaaaagagtat
tcttacagcctgcatttcattcagttctttctgatatttgatcatctgtt
gtgtcaatttttcacgttcagacttaagctccatatgtagctttctgttt
tcttctcttttcttcgcacatctgtgtcactaccacgcttgacaggttct
ttcgattcatgatcttcggcaacttattcacagccttaaaaagtagcata
caataaatatgtgatgttttctagaactcatcaattacgagctacataat
cactagtatttctttccttgtctacagggattaaggaattcttatggcct
taaagaagtaggtgatcaagtgtctaggtacagctaggccagagtcagat
ctggtactccatgtgacgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_16828560_16829757
seq2: B6Ng01-012D23.b_43_1234

seq1  GAATTCTTTTTGAAATAATTATTTTGAAGCTTTTTTTTTTTTCTGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGAAATAATTATTTTGAAGCTTTTTTTTTTTTCTGTTTCC  50

seq1  CTTCATTGTAAGGTTGTATTCCATAAAAGCTAAGCTATTCTTATACCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTGTAAGGTTGTATTCCATAAAAGCTAAGCTATTCTTATACCTGC  100

seq1  ATTCATGTAAGAGATAGTGATGTGTGTAGTGGTGCACGCCTTCATTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTAAGAGATAGTGATGTGTGTAGTGGTGCACGCCTTCATTCCCA  150

seq1  GCACTCAGGAGGCAGAGAAACGCAGGTCTCTAAGTTCAAGGCTAGACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAGGAGGCAGAGAAACGCAGGTCTCTAAGTTCAAGGCTAGACTGG  200

seq1  TCTATGTAGCACAGGCCAGCCAGTGCTAAACAGTGAGACTTTGCCTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAGCACAGGCCAGCCAGTGCTAAACAGTGAGACTTTGCCTCCAA  250

seq1  AAACAAAACAAAACAACAACAACAAAACGAAGGACGGTGTTGTGGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAACAACAACAAAACGAAGGACGGTGTTGTGGGGTGG  300

seq1  TGATCTGCCCATCTTGTCAGATCCTTGACCAGGTCTCACACTAGCGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGCCCATCTTGTCAGATCCTTGACCAGGTCTCACACTAGCGTATG  350

seq1  TAACCTATCAGGATATTCACGGCATTCAAGCTTTCCATGAACAGATTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTATCAGGATATTCACGGCATTCAAGCTTTCCATGAACAGATTGTC  400

seq1  ATTGCAGTGAAGGCTCCAGAGGAAACCAGACTGGATGTTCCAGCTCCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTGAAGGCTCCAGAGGAAACCAGACTGGATGTTCCAGCTCCCAG  450

seq1  AGAAGTAGGTAGCGCTGCACTGCAGAGAGGGCTTAAAAAGGGAGGAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGGTAGCGCTGCACTGCAGAGAGGGCTTAAAAAGGGAGGAGGTG  500

seq1  GGTTGGCCGCCACAGCAGTGACCACCAAGTCACTTGTTACCATGTGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCGCCACAGCAGTGACCACCAAGTCACTTGTTACCATGTGCTTG  550

seq1  TCAAGCTCTACACCTTAACTGTGAGTGAGGTAATCCCTGTAACCTTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTCTACACCTTAACTGTGAGTGAGGTAATCCCTGTAACCTTGGAG  600

seq1  ATGGGAGGGTCAGCCCAGAGAGGCAGGAGTGCACACAGTGACCACCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGGTCAGCCCAGAGAGGCAGGAGTGCACACAGTGACCACCAGGA  650

seq1  CCAGTGTAGGACAGGGTGGCTTGCAGGCGCTCTCAGCCATGTTGCTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTAGGACAGGGTGGCTTGCAGGCGCTCTCAGCCATGTTGCTGCTG  700

seq1  TTGGGCTGTAGGAGCGATCACACTATTGGCCTTGGGCTTCAAATTCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTAGGAGCGATCACACTATTGGCCTTGGGCTTCAAATTCAAAA  750

seq1  AGTAATAGCTGGCCCAGCCAGAGCACTGGTGAGCTCGCCGAAGCCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAGCTGGCCCAGCCAGAGCACTGGTGAGCTCGCCGAAGCCTAGGA  800

seq1  ATGAGCTGGAACACTGAGTCACAGATGTACAGCCTTCCTGAGATCAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTGGAACACTGAGTCACAGATGTACAGCCTTCCTGAGATCAGCCT  850

seq1  TGGTGTCGGCTGCTGCTAGCTGCTCCAGGGAAGTTTGCGTTGAGTGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCGGCTGCTGCTAGCTGCTCCAGGGAAGTTTGCGTTGAGTGTGAT  900

seq1  TGTCACCAG-AAGGTCACTTCGTGAGAATAGGGTCAAAACCAAAGCCGGT  949
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAGAAAGGTCACTTCGTGAGAATAGGGTCAAAACCAAAGCCGGT  950

seq1  GACCC-TTCTTAGCACAGACCAGGG-AGTTCTAACAGCCCGGTGTCCCCC  997
      ||||| ||||||||||||||||||| |||||||||||||||||||  |||
seq2  GACCCTTTCTTAGCACAGACCAGGGAAGTTCTAACAGCCCGGTGT--CCC  998

seq1  AGCTGCTCGTACCCAGCT--CTTCATGGAGGTAGTGAGGAAT-AGTCACA  1044
      ||||||||||||||||||   ||||||||||||||||||||| |||||||
seq2  AGCTGCTCGTACCCAGCTTCTTTCATGGAGGTAGTGAGGAATAAGTCACA  1048

seq1  -CCACCCTCCTTTCTGTTGTCCCCAGCAGAACACGGTCCAAGTGAGACCC  1093
       ||||||| ||||||||||||||||||||||||| |||  |||   ||||
seq2  CCCACCCTTCTTTCTGTTGTCCCCAGCAGAACAC-GTC--AGTTGAACCC  1095

seq1  TGTTACCT-GACAGTGGATCGTTAGTCATGAAGGAGCACTAGCTTTTCCC  1142
      |||||||| |||||||||||| |||||||| |||| |  |||||||  | 
seq2  TGTTACCTGGACAGTGGATCG-TAGTCATG-AGGAACTATAGCTTT--CT  1141

seq1  TCAGCCACATTCAGGTTGTGAC-TTGGTGCCGCTCCTTAGTTTGATTTGG  1191
      ||| |  || ||||||   |||  |||||||| ||  ||| |||||||||
seq2  TCAAC--CAATCAGGTGTGGACACTGGTGCCG-TC--TAG-TTGATTTGG  1185

seq1  ATTTAGA  1198
      |||||||
seq2  ATTTAGA  1192

seq1: chr12_16979262_16980452
seq2: B6Ng01-012D23.g_65_1234 (reverse)

seq1  TGCGTCACTGTGGGTACCACGGATCTGAACTCTGGCCCTAGTGCTTGTAC  50
      ||||||||   | ||||||  |||||| ||||||| |||||    |||||
seq2  TGCGTCACATGGAGTACCA--GATCTG-ACTCTGG-CCTAG---CTGTAC  43

seq1  ACTAGACACTTGATTCACTTTACATCTCTCTAAGCCCAAAAGAATTTCCT  100
       |||||||||||| |||| |   |  ||| |||| ||| ||||| |||||
seq2  -CTAGACACTTGA-TCACCT---ACTTCTTTAAGGCCATAAGAA-TTCCT  87

seq1  TAAAACCCTGTAGAC-AGGAAAGAAATTACTAGTGATTATGTAGCTCGTA  149
      | || |||||||||| |||||||||| |||||||||||||||||||||||
seq2  T-AATCCCTGTAGACAAGGAAAGAAA-TACTAGTGATTATGTAGCTCGTA  135

seq1  ATTGATGAGTTTCTAAGAAAACATCAACATAATTTATTGTATGCTTACTT  199
      ||||||||| |||| |||||||||| |||| ||||||||||||| |||||
seq2  ATTGATGAG-TTCT-AGAAAACATC-ACAT-ATTTATTGTATGC-TACTT  180

seq1  TTTAAGGCTGTGAATAAGTTGGCGGAGATCATGAATCGAAAAGAACCTGT  249
      ||||||||||||||||||||| || ||||||||||||| |||||||||||
seq2  TTTAAGGCTGTGAATAAGTTGCCGAAGATCATGAATCG-AAAGAACCTGT  229

seq1  CAAGCGTGGTAGTGACACAGATGTGCGAAGAAAAGAGAAGGAAAACAGAA  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAAGCGTGGTAGTGACACAGATGTGCGAAGAAAAGAGAA-GAAAACAGAA  278

seq1  AGCTACATATGGAGCTTAAGTCTGAACGTGAAAAATTGACACAACAGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATATGGAGCTTAAGTCTGAACGTGAAAAATTGACACAACAGATG  328

seq1  ATCAAATATCAGAAAGAACTGAATGAAATGCAGGCTGTAAGAATACTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATATCAGAAAGAACTGAATGAAATGCAGGCTGTAAGAATACTCTT  378

seq1  TTCCACTGAAAACGTTTTAAAAAACAATTATTTTCTTATCTTTGCAGAAC  449
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCCACTGAAAACGTTTTAGAAAACAATTATTTTCTTATCTTTGCAGAAC  428

seq1  ATTTTGTTAGTATTTATTACTGAACTGTGACTCATAATTACAATGCACAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTAGTATTTATTACTGAACTGTGACTCATAATTACAATGCACAT  478

seq1  TTCATCTGTTATACATTTTCTTACAGCAAATAGCTGAAGAGAGCCAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGTTATACATTTTCTTACAGCAAATAGCTGAAGAGAGCCAAATT  528

seq1  CGAATAGAACTCCAGATGACCCTGGACAGTAAAGACAGCGACATTGAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAGAACTCCAGATGACCCTGGACAGTAAAGACAGCGACATTGAACA  578

seq1  GCTGCGGTCACAGCTCCAGGCCTTGCATATTGGTATGGACAGTTCCAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGTCACAGCTCCAGGCCTTGCATATTGGTATGGACAGTTCCAGTA  628

seq1  TAGGCAGTGGACCAGGCGATGCTGAGCCTGATGATGGATTTCCAGGTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGTGGACCAGGCGATGCTGAGCCTGATGATGGATTTCCAGGTACA  678

seq1  CATCCTTGGTCAGCCCTTGCATTTGCCTTAAATTTAAGTCAGGTGATTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTGGTCAGCCCTTGCATTTGCCTTAAATTTAAGTCAGGTGATTGC  728

seq1  TTTGATTCCATGAATGACTTTACTTTTAAGGAAAAGGTTTGCCATTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCCATGAATGACTTTACTTTTAAGGAAAAGGTTTGCCATTTCTT  778

seq1  TAAAGGAAATCCTACTTAGAATGGGATTCACATGACCTTTTGGACTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAATCCTACTTAGAATGGGATTCACATGACCTTTTGGACTTGTT  828

seq1  TGATTAAAAACGAACAAGTAAATAAATTCTAAATGTTTAGGAGTATAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAAACGAACAAGTAAATAAATTCTAAATGTTTAGGAGTATAACT  878

seq1  CACATGTAGTGCCTATCTGTTTTTTTAAGTTTTCACTTTTTTCTTCTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGTGCCTATCTGTTTTTTTAAGTTTTCACTTTTTTCTTCTCTC  928

seq1  TTCTCTGCCTCACTTTCTTGCTTGTGGGTATTTAGTCCATATCACTCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCCTCACTTTCTTGCTTGTGGGTATTTAGTCCATATCACTCAGT  978

seq1  CACACACTATGGAATCCATGTCTTTCACCTACCAGCGGTCCTCTACCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTATGGAATCCATGTCTTTCACCTACCAGCGGTCCTCTACCTCT  1028

seq1  CTCAGTATTGCCACTAAGCCCTCCAGTTCTCACACGCTTCTTGACTTTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATTGCCACTAAGCCCTCCAGTTCTCACACGCTTCTTGACTTTGA  1078

seq1  CTCTGAAGAAGATTCCTTGCCTTACTTACCTAGTTCATCGGAGCCTATTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAAGATTCCTTGCCTTACTTACCTAGTTCATCGGAGCCTATTA  1128

seq1  GTACAGGTGATATCTGAAAACATCTTCCTGGCTTTGGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGTGATATCTGAAAACATCTTCCTGGCTTTGGAATTC  1170