BAC Information

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BAC

Clone NameB6Ng01-013F11
Chromosome12 (Build37)
Map Location 55,210,421 - 55,347,669
singlet/doubletdoublet
Overlap geneEgln3
Upstream geneAkap6, Npas3
Downstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013F11.bB6Ng01-013F11.g
ACCDH848181DH848182
length1,174996
definitionDH848181|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F11, 5' end.DH848182|Mus musculus domesticus DNA, BAC clone: B6Ng01-013F11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,346,448 - 55,347,669)(55,210,421 - 55,211,425)
sequence
gaattccatatttcaagtggctttgtgcaatgtcttaagaaagataataa
tcttgaatatagcccagcatttgggaggcagaggcaggcggatttctgag
ttggaggccagcctggtctacaaaatgagttccaggacagccaggaatac
acagagaaaccctgtctcgaaaaaccattaaaaaaaaaaaaaaaggagta
gggggacttgctgtctgagacacagtacttaggtagttaagaaataacac
tcaacaatgctagattttggccagtctttgccagttccttccaagggagt
gataattatacccaatttttagagtggagtaaaacacattatatgtgaaa
atcctttagttgaaggagtcaagatggtattaaaaagttgaagggcatgc
ctcctttatgttttgtgagaactagtatggcgaatttacttctggggcaa
acaatttgagggcaagcgagtcattctgcttcagtgatttctggtacaag
catcatttactaagatcaaatcccttaactgaagatttacctgtgacttc
tagatttacctgtttcctatttagtggtttgtgattctctgtatctttta
tgaactatattgatagctttttttctcttaacaataatgttaatatcgtc
cattttacctattatggttataaaatcacagtatcatgcctcaaaaaatt
caaactaaatgaaacagtcatttaaagccccatttcctacacagctatta
aaaattttgtatataaagatatattctacgaagttttctggtcattcagt
tcaatattgatcttaccttttattctttattttattcttttattaataat
aggtgttgacaatgtataaaaattatactaatacatgttcaaatgagata
tttggttatctgggcatgctatttctctctctctctctctctctctctct
ctctctctcggttgggatatttacctttaaaaaaagaacatatgctcttt
ttagattgtgtagtctgtaatgccctctgtaaccatggcattgctagaga
gtagcttcgacatcttgttataacggttgctcatcaaacaggcatgatgc
cctctctgaactgccacaacagcattggttaatatagcgacgttactcct
tgggattgaagtgacattacatgg
gaattcagttcccagtacctgcttcagtgtctcacaatcacctgtaagtc
cagccctaggggacaccaggcctctggcctccatgggcacctgtacccaa
atgcatatgctctcatggcatatgcacctaaacacatagaatgaaatata
tacacacaaacacataggcctgatggggcacatctctaatcccagcactc
aggatgcagatgcatctagatctttgtgagaacctgtctcaaaaagaggg
gcaggtgggagcagggtgagcaatagaagacagctggctccctcatgcag
ggtaccaactcatgtgaacacacacatatacctgagaaaagaaaaaccac
aaggggaagaaagagatggaagaaaggaagggggaagatcttcagggaat
ctctctgcgacctggggcacccctagaggccctttgagtaaagctgtgac
ttggagaactggcgggactttccactggacagccccactaagctctctgc
ccagggagggtcacagagagtctgtagtgtcagtcgcaggaattcagcca
gccacacaggatcacaggagaaagaacacagaggacttgacagagttttg
agtattcttcaaacaagcttgagatggaggtaagtctccccagtctttcc
ccactgcagatggagtcctacaccctccctagttgagcctgtacctggta
agactgtcacccctgaagtggaggacacctcggtgtgaaaggagattgga
acccttactgggaagcaagggacatttaagaaggtcaagaaggcggccct
tgaaaaccaatgtcagcggcttctggaaaacagaccgaagaacatgaagg
aaagccatagaaacttgctcatgaggcaactgtataatcatagcagaatg
gacatgggtgtccctgagccagtgattagactctaagtccagaatggaca
gaccagtgactcatgggaagaggaaaggggactctggttctggcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55346448_55347669
seq2: B6Ng01-013F11.b_47_1220 (reverse)

seq1  CCATGTAATGTCATATTTCTACTTACCAAGAGGGAAAGGTAAACTGGCTC  50
      ||||||||||||  | ||| |  | |||||  | || |          ||
seq2  CCATGTAATGTC--ACTTCAA--TCCCAAGGAGTAACG----------TC  36

seq1  GCTTTACTAACTAACACAATGCCCTGTTGTTGGGCAGTTTCTAGAAGAGG  100
      ||| || ||||     |||||  |||||||  |||||||   || |||||
seq2  GCTATATTAAC-----CAATG--CTGTTGT--GGCAGTT--CAG-AGAGG  74

seq1  CACTCATGTGCTTGTCTGATGGAGGGCAACACCGTTATAAACAAAGACTG  150
         |||  ||| ||| ||||   | |||  ||||||||||   |||| ||
seq2  GCATCA--TGCCTGTTTGAT---GAGCA--ACCGTTATAA--CAAGA-TG  114

seq1  TCGGAAGCTACTCTCTAGCAAAGGCCATGGGTACAGAGGGCACTACAGAA  200
      || |||||||||||||||| || ||||||| ||||||||||| ||||| |
seq2  TC-GAAGCTACTCTCTAGC-AATGCCATGGTTACAGAGGGCATTACAG-A  161

seq1  CTACACAATCTAGAAAGAGCATATGTTCTTTTATAAAAGGAAAATATACA  250
      |||||||||||| ||||||||||||||||||| | ||||| ||||||   
seq2  CTACACAATCTAAAAAGAGCATATGTTCTTTTTTTAAAGGTAAATAT---  208

seq1  CACAAACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAT  300
      | ||   || ||||||||||||||||||||||||||||||||||||||  
seq2  CCCA---ACCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA--  253

seq1  AAGCATGCCCAGATAACCAAATATCTCATTTTGAACATGTATTAGTATAA  350
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGCATGCCCAGATAACCAAATATCTCA-TTTGAACATGTATTAGTATAA  302

seq1  TTTTTATACATTGTCAACACCTATTATTAATAAAAGAATAAAATAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATACATTGTCAACACCTATTATTAATAAAAGAATAAAATAAAGAA  352

seq1  TAAAAGGTAAGATCAATATTGAACTGAATGACCAGAAAACTTCGTAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTAAGATCAATATTGAACTGAATGACCAGAAAACTTCGTAGAAT  402

seq1  ATATCTTTATATACAAAATTTTTAATAGCTGTGTAGGAAATGGGGCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTATATACAAAATTTTTAATAGCTGTGTAGGAAATGGGGCTTTA  452

seq1  AATGACTGTTTCATTTAGTTTGAATTTTTTGAGGCATGATACTGTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGTTTCATTTAGTTTGAATTTTTTGAGGCATGATACTGTGATTT  502

seq1  TATAACCATAATAGGTAAAATGGACGATATTAACATTATTGTTAAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCATAATAGGTAAAATGGACGATATTAACATTATTGTTAAGAGAA  552

seq1  AAAAAGCTATCAATATAGTTCATAAAAGATACAGAGAATCACAAACCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTATCAATATAGTTCATAAAAGATACAGAGAATCACAAACCACT  602

seq1  AAATAGGAAACAGGTAAATCTAGAAGTCACAGGTAAATCTTCAGTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAAACAGGTAAATCTAGAAGTCACAGGTAAATCTTCAGTTAAGG  652

seq1  GATTTGATCTTAGTAAATGATGCTTGTACCAGAAATCACTGAAGCAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATCTTAGTAAATGATGCTTGTACCAGAAATCACTGAAGCAGAAT  702

seq1  GACTCGCTTGCCCTCAAATTGTTTGCCCCAGAAGTAAATTCGCCATACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGCTTGCCCTCAAATTGTTTGCCCCAGAAGTAAATTCGCCATACTA  752

seq1  GTTCTCACAAAACATAAAGGAGGCATGCCCTTCAACTTTTTAATACCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACAAAACATAAAGGAGGCATGCCCTTCAACTTTTTAATACCATC  802

seq1  TTGACTCCTTCAACTAAAGGATTTTCACATATAATGTGTTTTACTCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCTTCAACTAAAGGATTTTCACATATAATGTGTTTTACTCCACT  852

seq1  CTAAAAATTGGGTATAATTATCACTCCCTTGGAAGGAACTGGCAAAGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTGGGTATAATTATCACTCCCTTGGAAGGAACTGGCAAAGACT  902

seq1  GGCCAAAATCTAGCATTGTTGAGTGTTATTTCTTAACTACCTAAGTACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAATCTAGCATTGTTGAGTGTTATTTCTTAACTACCTAAGTACTG  952

seq1  TGTCTCAGACAGCAAGTCCCCCTACTCCTTTTTTTTTTTTTTTAATGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGACAGCAAGTCCCCCTACTCCTTTTTTTTTTTTTTTAATGGTT  1002

seq1  TTTCGAGACAGGGTTTCTCTGTGTATTCCTGGCTGTCCTGGAACTCATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTCTGTGTATTCCTGGCTGTCCTGGAACTCATTT  1052

seq1  TGTAGACCAGGCTGGCCTCCAACTCAGAAATCCGCCTGCCTCTGCCTCCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCCAACTCAGAAATCCGCCTGCCTCTGCCTCCC  1102

seq1  AAATGCTGGGCTATATTCAAGATTATTATCTTTCTTAAGACATTGCACAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGCTATATTCAAGATTATTATCTTTCTTAAGACATTGCACAA  1152

seq1  AGCCACTTGAAATATGGAATTC  1222
      ||||||||||||||||||||||
seq2  AGCCACTTGAAATATGGAATTC  1174

seq1: chr12_55210421_55211425
seq2: B6Ng01-013F11.g_65_1060

seq1  GAATTCAGTTCCCAGTACCTGCTTCAGTGTCTCACAATCACCTGTAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAGTACCTGCTTCAGTGTCTCACAATCACCTGTAAGTC  50

seq1  CAGCCCTAGGGGACACCAGGCCTCTGGCCTCCATGGGCACCTGTACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTAGGGGACACCAGGCCTCTGGCCTCCATGGGCACCTGTACCCAA  100

seq1  ATGCATATGCTCTCATGGCATATGCACCTAAACACATAGAATGAAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATGCTCTCATGGCATATGCACCTAAACACATAGAATGAAATATA  150

seq1  TACACACAAACACATAGGCCTGATGGGGCACATCTCTAATCCCAGCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAAACACATAGGCCTGATGGGGCACATCTCTAATCCCAGCACTC  200

seq1  AGGATGCAGATGCATCTAGATCTTTGTGAGAACCTGTCTCAAAAAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAGATGCATCTAGATCTTTGTGAGAACCTGTCTCAAAAAGAGGG  250

seq1  GCAGGTGGGAGCAGGGTGAGCAATAGAAGACAGCTGGCTCCCTCATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGGAGCAGGGTGAGCAATAGAAGACAGCTGGCTCCCTCATGCAG  300

seq1  GGTACCAACTCATGTGAACACACACATATACCTGAGAAAAGAAAAACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCAACTCATGTGAACACACACATATACCTGAGAAAAGAAAAACCAC  350

seq1  AAGGGGAAGAAAGAGATGGAAGAAAGGAAGGGGGAAGATCTTCAGGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAGAAAGAGATGGAAGAAAGGAAGGGGGAAGATCTTCAGGGAAT  400

seq1  CTCTCTGCGACCTGGGGCACCCCTAGAGGCCCTTTGAGTAAAGCTGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCGACCTGGGGCACCCCTAGAGGCCCTTTGAGTAAAGCTGTGAC  450

seq1  TTGGAGAACTGGCGGGACTTTCCACTGGACAGCCCCACTAAGCTCTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAACTGGCGGGACTTTCCACTGGACAGCCCCACTAAGCTCTCTGC  500

seq1  CCAGGGAGGGTCACAGAGAGTCTGTAGTGTCAGTCGCAGGAATTCAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGGGTCACAGAGAGTCTGTAGTGTCAGTCGCAGGAATTCAGCCA  550

seq1  GCCACACAGGATCACAGGAGAAAGAACACAGAGGACTTGACAGAGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAGGATCACAGGAGAAAGAACACAGAGGACTTGACAGAGTTTTG  600

seq1  AGTATTCTTCAAACAAGCTTGAGATGGAGGTAAGTCTCCCCAGTCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTTCAAACAAGCTTGAGATGGAGGTAAGTCTCCCCAGTCTTTCC  650

seq1  CCACTGCAGATGGAGTCCTACACCCTCCCTAGTTGAGCCTGTACCTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAGATGGAGTCCTACACCCTCCCTAGTTGAGCCTGTACCTGGTA  700

seq1  AGACTGTCACCCCTGAAGTGGAGGACACCTCGGTGTGAAAGGAGATTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTCACCCCTGAAGTGGAGGACACCTCGGTGTGAAAGGAGATTGGA  750

seq1  ACCCTTACTGGGAAGCAAGGGACATTTAAGAAGGTCAAGAAGGCGGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTACTGGGAAGCAAGGGACATTTAAGAAGGTCAAGAAGGCGGCCCT  800

seq1  TG-AAACCAATGTCAGCGGCTTCTGGAAAACAGACCGAAGAACATGAAGG  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCAATGTCAGCGGCTTCTGGAAAACAGACCGAAGAACATGAAGG  850

seq1  AAAGCCATAGAAACTTGCTCATGAGGCAACTGTAATAATCATAGCAGAAG  899
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  AAAGCCATAGAAACTTGCTCATGAGGCAACTGT-ATAATCATAGCAGAAT  899

seq1  GGACATGGGTGTCCCTGAGCCCAGTGATTAGAACTCTAAGGTCACAGAAT  949
      ||||||||||||||||||| ||||||||||| ||||||| ||| ||||||
seq2  GGACATGGGTGTCCCTGAG-CCAGTGATTAG-ACTCTAA-GTC-CAGAAT  945

seq1  GGACAAGACCAGGTGACTCATGGGGAAGAGGAAAAGGGGGACTCTGGTTC  999
      |||| |||||| ||||||||| ||||||||||||  ||||||||||||||
seq2  GGAC-AGACCA-GTGACTCAT-GGGAAGAGGAAA--GGGGACTCTGGTTC  990

seq1  TGGCGT  1005
      ||||||
seq2  TGGCGT  996