BAC Information

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BAC

Clone NameB6Ng01-013H06
Chromosome12 (Build37)
Map Location 104,193,468 - 104,347,412
singlet/doubletdoublet
Overlap gene9030205A07Rik, LOC667269
Upstream geneAtxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c
Downstream genePrima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013H06.bB6Ng01-013H06.g
ACCDH848263DH848264
length835781
definitionDH848263|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H06, 5' end.DH848264|Mus musculus domesticus DNA, BAC clone: B6Ng01-013H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,193,468 - 104,194,300)(104,346,638 - 104,347,412)
sequence
gaattcttttgggctgtcatgatgtgttagaacagtggttctcaaccttc
ctaactccaattcttcagtacagatcctcatgttgtggtgacccctaacc
aaaaaaattactttcattgctactttataactgtaatcttgatgctgtta
tgaatcgcaatgtaaatatttttggagatagaggtttgctgaaggggttg
agacccacaggttgaaaccaccatgtgagatgttcatgtgcatttaactc
ttatactctgaagagatatggcagttccatggaagtgagcattgctggct
tagatgtgaagtctaccgctgccgacagtgaagagaactagcctccatgc
actcaccactagtctagctttcagtggtggggaaggctcagccattttta
tgtagcttctttcatctcaagcattctatttctgtcctggttgtctgtcc
ttctaaccccttcaacagtccataaatcatcatgagtctcattttatatt
tgacgttggatttgatgtagggaggtgtccagcatcttgaggtatctttc
gtttttcatcaatcccagagactgactgactcatgaataaaattgaaagg
gtgtatgtacacatatacattcatgtacatatactgtagtttcaattgta
aaaaccaacgggcttgccatagacgtagaaaaagatgataactcatgatc
atatgaccaatttgccataaagggttacatatatttgagatggcccaatc
ataatccacattaaaaaaaagctgggtacatgtgtgtgtgcacgtgcaca
acacatacacacatacacatcacacacacacacac
gaattcaaaatccgtgagcacaaagttcaagggcaaaccagagacccaga
aatgaggattccactgactgcctacccaggcaggtcacagcccaaaggca
agatgtttccagcgtgcaatgggaggctctaaaagctttccaatcaaatg
tcagaaaatagcagagctaacattattgttattattattattattattat
tattattattattattattattttggacttttgcacactcagttcaaaag
ggaaagcaacattcctgagagagttgaacaattaaccaaataggaaaggg
actggtttagcatctgacgggattcttcataagaatatatggggtgttcc
tcaccctccttagaaagtataaaaactgttgtccggatgtacattacgta
tcccggctaagttctgggaagtacctttctccttctcgctgtatctgctt
atgttgctgttgtcagtgtacagcggtcctgccgtggcgtggggcttgca
gctatggtactgcgcattgagtgtattcactgttatgtgaatcaggtgca
gcagggtctttgctgacatcacagtctctgtacggatactgttcaacagg
ggagaaaatacaagtggttatttcaaaggatacgtttcctcgctcatccc
taccggatggctagtctctcgtatctcccatgcactagagaaacgcgcaa
gaaaagtaacaacatggcttcagaccacacttttgttttagaggggttcc
ctgtctcttccttgtaccaaaccactgacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104193468_104194300
seq2: B6Ng01-013H06.b_47_881

seq1  GAATTCTTTTGGGCTGTCATGATGTGTTAGAACAGTGGTTCTCAACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGGCTGTCATGATGTGTTAGAACAGTGGTTCTCAACCTTC  50

seq1  CTAACTCCAATTCTTCAGTACAGATCCTCATGTTGTGGTGACCCCTAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCAATTCTTCAGTACAGATCCTCATGTTGTGGTGACCCCTAACC  100

seq1  AAAAAAATTACTTTCATTGCTACTTTATAACTGTAATCTTGATGCTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTACTTTCATTGCTACTTTATAACTGTAATCTTGATGCTGTTA  150

seq1  TGAATCGCAATGTAAATATTTTTGGAGATAGAGGTTTGCTGAAGGGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCGCAATGTAAATATTTTTGGAGATAGAGGTTTGCTGAAGGGGTTG  200

seq1  AGACCCACAGGTTGAAACCACCATGTGAGATGTTCATGTGCATTTAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACAGGTTGAAACCACCATGTGAGATGTTCATGTGCATTTAACTC  250

seq1  TTATACTCTGAAGAGATATGGCAGTTCCATGGAAGTGAGCATTGCTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCTGAAGAGATATGGCAGTTCCATGGAAGTGAGCATTGCTGGCT  300

seq1  TAGATGTGAAGTCTACCGCTGCCGACAGTGAAGAGAACTAGCCTCCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTGAAGTCTACCGCTGCCGACAGTGAAGAGAACTAGCCTCCATGC  350

seq1  ACTCACCACTAGTCTAGCTTTCAGTGGTGGGGAAGGCTCAGCCATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCACTAGTCTAGCTTTCAGTGGTGGGGAAGGCTCAGCCATTTTTA  400

seq1  TGTAGCTTCTTTCATCTCAAGCATTCTATTTCTGTCCTGGTTGTCTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTCTTTCATCTCAAGCATTCTATTTCTGTCCTGGTTGTCTGTCC  450

seq1  TTCTAACCCCTTCAACAGTCCATAAATCATCATGAGTCTCATTTTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCCCTTCAACAGTCCATAAATCATCATGAGTCTCATTTTATATT  500

seq1  TGACGTTGGATTTGATGTAGGGAGGTGTCCAGCATCTTGAGGTATCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTGGATTTGATGTAGGGAGGTGTCCAGCATCTTGAGGTATCTTTC  550

seq1  G-TTTTCATCAATCCCAGAGACTGACTGACTCATGAATAAAATTGAAAGG  599
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATCAATCCCAGAGACTGACTGACTCATGAATAAAATTGAAAGG  600

seq1  GTGTATGTACACATATACATTCATGTACATATACTGTAGTTTCAATTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTACACATATACATTCATGTACATATACTGTAGTTTCAATTGTA  650

seq1  AAAACCAACGGGCTTGCCATAGACGTAGAAAAAGATGATAACTCATGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAACGGGCTTGCCATAGACGTAGAAAAAGATGATAACTCATGATC  700

seq1  ATATGACCAATTTGCCATAAAGGGTTACATATATTTGAGATGGCCCAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACCAATTTGCCATAAAGGGTTACATATATTTGAGATGGCCCAATC  750

seq1  ATAATCCACATTAAAAAAAAGCTGGGTACATGTGTGTGTGCACGTGCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCACATTAAAAAAAAGCTGGGTACATGTGTGTGTGCACGTGCACA  800

seq1  ACACATACACACACACACA-CACACACACACACAC  833
      ||||||||||||| ||||| |||||||||||||||
seq2  ACACATACACACATACACATCACACACACACACAC  835

seq1: chr12_104346638_104347412
seq2: B6Ng01-013H06.g_67_847 (reverse)

seq1  CCGTCAGTGGTCTGGTACAAGG-AGAGACAGGGAA-CCCTCTAAAAC-AA  47
      ||||||||||| |||||||||| |||||||||||| ||||||||||| ||
seq2  CCGTCAGTGGTTTGGTACAAGGAAGAGACAGGGAACCCCTCTAAAACAAA  50

seq1  AGTGTGGTCTGAAGCCATGTTGTTAC-TTTCTTGCGCGTTTCTCTAGTGC  96
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTGTGGTCTGAAGCCATGTTGTTACTTTTCTTGCGCGTTTCTCTAGTGC  100

seq1  ATGGGAGATACGAGAGACTAGCCATCCGGTA-GGATGAGCGAGGAAACGT  145
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGGAGATACGAGAGACTAGCCATCCGGTAGGGATGAGCGAGGAAACGT  150

seq1  ATCCTTTGAAATAACCACTTGTATTTTCTCCCCTGTTGAACAGTATCCGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGAAATAACCACTTGTATTTTCTCCCCTGTTGAACAGTATCCGT  200

seq1  ACAGAGACTGTGATGTCAGC-AAGACCCTGCTGCACCTGATTCACATAAC  244
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGAGACTGTGATGTCAGCAAAGACCCTGCTGCACCTGATTCACATAAC  250

seq1  AGTGAATACACTCAATGCGCAGTACCATAGCTGCAAGCCCCACGCCACGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATACACTCAATGCGCAGTACCATAGCTGCAAGCCCCACGCCACGG  300

seq1  CAGGACCGCTGTACACTGACAACAGCAACATAAGCAGATACAGCGAGAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCGCTGTACACTGACAACAGCAACATAAGCAGATACAGCGAGAAG  350

seq1  GAGAAAGGTACTTCCCAGAACTTAGCCGGGATACGTAATGTACATCCGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTACTTCCCAGAACTTAGCCGGGATACGTAATGTACATCCGGA  400

seq1  CAACAGTTTTTATACTTTCTAAGGAGGGTGAGGAACACCCCATATATTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTTTTATACTTTCTAAGGAGGGTGAGGAACACCCCATATATTCT  450

seq1  TATGAAGAATCCCGTCAGATGCTAAACCAGTCCCTTTCCTATTTGGTTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAATCCCGTCAGATGCTAAACCAGTCCCTTTCCTATTTGGTTAA  500

seq1  TTGTTCAACTCTCTCAGGAATGTTGCTTTCCCTTTTGAACTGAGTGTGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAACTCTCTCAGGAATGTTGCTTTCCCTTTTGAACTGAGTGTGCA  550

seq1  AAAGTCCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAA  600

seq1  TAACAATAATGTTAGCTCTGCTATTTTCTGACATTTGATTGGAAAGCTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAATGTTAGCTCTGCTATTTTCTGACATTTGATTGGAAAGCTTT  650

seq1  TAGAGCCTCCCATTGCACGCTGGAAACATCTTGCCTTTGGGCTGTGACCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTCCCATTGCACGCTGGAAACATCTTGCCTTTGGGCTGTGACCT  700

seq1  GCCTGGGTAGGCAGTCAGTGGAATCCTCATTTCTGGGTCTCTGGTTTGCC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTAGGCAGTCAGTGGAATCCTCATTTCTGGGTCTCTGGTTTGCC  750

seq1  CTTGAACTTTGTGCTCACGGATTTTGAATTC  775
      |||||||||||||||||||||||||||||||
seq2  CTTGAACTTTGTGCTCACGGATTTTGAATTC  781