BAC Information

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BAC

Clone NameB6Ng01-013I08
Chromosome12 (Build37)
Map Location 117,873,453 - 117,995,596
singlet/doubletdoublet
Overlap genePtprn2
Upstream geneIgh, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013I08.bB6Ng01-013I08.g
ACCDH848315DH848316
length9281,121
definitionDH848315|Mus musculus domesticus DNA, BAC clone: B6Ng01-013I08, 5' end.DH848316|Mus musculus domesticus DNA, BAC clone: B6Ng01-013I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,873,453 - 117,874,355)(117,994,583 - 117,995,596)
sequence
gaattctacatccagttctgcaggcagcaatgagagagagagagagagag
agagagagagagagagagagagagagagagagagagagagaggactgact
aggccatttggaatcccacccccagtgatgtgcttcctccaacaaagcca
cacctattccaacaaggccacaccccctaataatgccatttcctctgagc
ctatgggggccattttcattcaaatctctgccaaagtggaagggtataat
tataatgttagcaggactaggagagacagtggctgtcaccagactgcctg
tcaagagggacatgcaggaagcaaatctgtttactttataaccttgtaaa
gttgggggcaaatccatacagcagtgggcacagcactgagcgccaagacc
agtgttagacagagatagactagggacagaaggtaaagttatggagctta
ggggagaatctttaccttaggcatacacttgggtggaagaccaagggaag
gaaagagccacctgcccggacaggcagtaggcaggaaagcttaagttgtt
gactgacaggactacttatctggaagtcactttgacctgtgacacatgga
tccaagtctcaactccctgaagcttacatgaatttttttaaagtttgcca
aacagagataaatgttttagatatgttaccatgactgctgtctgtaatct
gcactaagatccacactgtggtaaaagtagtgacccagtgtctataaaca
gctggagtactctcatacttttgagccatagcaaagcttgagggcccaag
ctgggataaaagcatgaacattctttcctctgtccagagggcttggagag
gtatagagattgggacagggatgttttcagaacaatgagaagacttttaa
gtgtatttagaaacacaacaaaaggaaa
gaattccactgaactcaactgatctccactgcattgcttgaactcaacca
aactgaacttactgcaccaccgtccacctgactcactctgcctgtcctta
agtaagtagcctctctttcctgtctgtttttctgtcctattgttcttgat
ttgggcatatcccatctctgactcattctgtcaagtctttctctgcccct
caatgagacaacactttcaaacatggatgtttccttctacaaaccaactt
tactttcattgttagggattagaaatgagtcctaaggttgcgtctgcatt
ccaactagatcaggtagaaattctttggatgtgattgcttgccagagcag
ccatgttgctggattaaaattcttctacacttactagaactccatcatat
gagattgttttcttttcaggagtcctttaagcttaatatttttagaattt
gactatatgctccggtttagattgaatctcagtagaaacacttgacctcc
ctgtaattaaatatgtaaatctttcactagatttgaaatttttcttctac
tttttctttatataaagtttcaacctctgattctctcttctctttcttgg
actcttattttgatgctaaccaataagtcctagaaggttactgttcatcc
atttgtcttttcttactgcaaataacttgtattcaattttataggtttct
tctgttatatcacttctgttattaatggtgtcaagtcattcgttatgttt
ttattgctctattttcttaacttttattaattacatttttctttgacaaa
ttttatacatatacataatgcaatatgcatattctcaactctctctgtat
cagcccatcagctcccactgggaacatctaaacccatgctcaacacagag
agtattggtttagctcccaggttttaacactgaggttgcttaaaaaaaca
aaaagtcattgtgttttcaatcctggaatacgaagtgtatttttttaatg
atttcatctagtaaattatcattggtcaataatttctgatctcataatgg
atgttccctgtgtttataaaacatgctaaacaactatttgagcctttatc
aggaagtccttcactccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_117873453_117874355
seq2: B6Ng01-013I08.b_49_956

seq1  GAATTCTACATCCAGTTCTGCAGGCAGCAAT----GAGAGAGAGAGAGAG  46
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  GAATTCTACATCCAGTTCTGCAGGCAGCAATGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTGACT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACTGACT  100

seq1  AGGCCATTTGGAATCCCACCCCCAGTGATGTGCTTCCTCCAACAAAGCCA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTTGGAATCCCACCCCCAGTGATGTGCTTCCTCCAACAAAGCCA  150

seq1  CACCTATTCCAACAAGGCCACACCCCCTAATAATGCCATTTCCTCTGAGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTCCAACAAGGCCACACCCCCTAATAATGCCATTTCCTCTGAGC  200

seq1  CTATGGGGGCCATTTTCATTCAAATCTCTGCCAAAGTGGAAGGGTATAAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGGGCCATTTTCATTCAAATCTCTGCCAAAGTGGAAGGGTATAAT  250

seq1  TATAATGTTAGCAGGACTAGGAGAGACAGTGGCTGTCACCAGACTGCCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTTAGCAGGACTAGGAGAGACAGTGGCTGTCACCAGACTGCCTG  300

seq1  TCAAGAGGGACATGCAGGAAGCAAATCTGTTTACTTTATAACCTTGTAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGGACATGCAGGAAGCAAATCTGTTTACTTTATAACCTTGTAAA  350

seq1  GTTGGGGGCAAATCCATACAGCAGTGGGCACAGCACTGAGCGCCAAGACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGCAAATCCATACAGCAGTGGGCACAGCACTGAGCGCCAAGACC  400

seq1  AGTGTTAGACAGAGATAGACTAGGGACAGAAGGTAAAGTTATGGAGCTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGACAGAGATAGACTAGGGACAGAAGGTAAAGTTATGGAGCTTA  450

seq1  GGGGAGAATCTTTACCTTAGGCATACACTTGGGTGGAAGACCAAGGGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAATCTTTACCTTAGGCATACACTTGGGTGGAAGACCAAGGGAAG  500

seq1  GAAAGAGCCACCTGCCCGGACAGGCAGTAGGCAGGAAAGCTTAAGTTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCCACCTGCCCGGACAGGCAGTAGGCAGGAAAGCTTAAGTTGTT  550

seq1  GACTGACAGGACTACTTATCTGGAAGTCACTTTGACCTGTGACACATGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAGGACTACTTATCTGGAAGTCACTTTGACCTGTGACACATGGA  600

seq1  TCCAAGTCTCAACTCCCTGAAGCTTACATGAATTTTTTTAAAGTTTGCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTCTCAACTCCCTGAAGCTTACATGAATTTTTTTAAAGTTTGCCA  650

seq1  AACAGAGATAAATGTTTTAGATATGTTACCATGACTGCTGTCTGTAATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGATAAATGTTTTAGATATGTTACCATGACTGCTGTCTGTAATCT  700

seq1  GCACTAAGATCCACACTGTGGTAAAAGTAGTGACCCAGTGTCTATAAACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGATCCACACTGTGGTAAAAGTAGTGACCCAGTGTCTATAAACA  750

seq1  GCTGGAGTACTCTCATACTTTTGAGCCATAGCAAAGCTTGAGGGCCCAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTACTCTCATACTTTTGAGCCATAGCAAAGCTTGAGGGCCCAAG  800

seq1  CTGGGATAAAAGCATGAACATTCTTTCCTCTGTCCAGAGGGC-TGGAGAG  845
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGGGATAAAAGCATGAACATTCTTTCCTCTGTCCAGAGGGCTTGGAGAG  850

seq1  GTATAGAGATT-GGACAGGGATGTTTTCAGAACAATGAGAAGCACTTTTA  894
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  GTATAGAGATTGGGACAGGGATGTTTTCAGAACAATGAGAAG-ACTTTTA  899

seq1  AGTGTATTT  903
      |||||||||
seq2  AGTGTATTT  908

seq1: chr12_117994583_117995596
seq2: B6Ng01-013I08.g_186_1185 (reverse)

seq1  AGAAGGAAGTGAAAGGACTTCCTGATATAGAGCTCAAAATAGTTGTTTTA  50
      |||||| |||| ||||||||||||||| || |||| ||||||||||||  
seq2  AGAAGG-AGTG-AAGGACTTCCTGATAAAG-GCTC-AAATAGTTGTTT--  44

seq1  GGCATGTTTTATAAACACAGAGAACATACACATAATGAGATCAGAAAATA  100
       ||||||||||||||||||| ||||||   ||| ||||||||||||| ||
seq2  AGCATGTTTTATAAACACAGGGAACAT--CCATTATGAGATCAGAAATTA  92

seq1  TGTGACCCAAATGATAAATTTAACTAAGATTGAAATCATTAAAAAAATAC  150
      | |||||  ||||||||  || ||| ||| ||||||||||||||||||||
seq2  T-TGACC--AATGATAA--TTTACT-AGA-TGAAATCATTAAAAAAATAC  135

seq1  ACTTCGATATTCCAGGATTGAAAAACACAATGACTTTT--GTTTTGTAAG  198
      |||||| ||||||||||||| |||||||||||||||||   |||| ||||
seq2  ACTTCG-TATTCCAGGATTG-AAAACACAATGACTTTTTGTTTTTTTAAG  183

seq1  CAACCTCAGTGTTAAAACCTGGGAGCTAAACCAATACTCTCTGTG-TGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAACCTCAGTGTTAAAACCTGGGAGCTAAACCAATACTCTCTGTGTTGAG  233

seq1  CATGGGTTTAGATGTTCCCAGTGGAGCCTGATGGGCTGATACAGAGAGAG  297
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  CATGGGTTTAGATGTTCCCAGTGGGAGCTGATGGGCTGATACAGAGAGAG  283

seq1  TTGAGAATATGCATATTGCATTATGTATATGTATAAAATTTGTCAAAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATATGCATATTGCATTATGTATATGTATAAAATTTGTCAAAGAA  333

seq1  AAATGTAATTAATAAAAGTTAAGAAAATAGAGCAATAAAAACATAACGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATTAATAAAAGTTAAGAAAATAGAGCAATAAAAACATAACGAA  383

seq1  TGACTTGACACCATTAATAACAGAAGTGATATAACAGAAGAAACCTATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGACACCATTAATAACAGAAGTGATATAACAGAAGAAACCTATAA  433

seq1  AATTGAATACAAGTTATTTGCAGTAAGAAAAGACAAATGGATGAACAGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATACAAGTTATTTGCAGTAAGAAAAGACAAATGGATGAACAGTA  483

seq1  ACCTTCTAGGACTTATTGGTTAGCATCAAAATAAGAGTCCAAGAAAGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTAGGACTTATTGGTTAGCATCAAAATAAGAGTCCAAGAAAGAGA  533

seq1  AGAGAGAATCAGAGGTTGAAACTTTATATAAAGAAAAAGTAGAAGAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAATCAGAGGTTGAAACTTTATATAAAGAAAAAGTAGAAGAAAAA  583

seq1  TTTCAAATCTAGTGAAAGATTTACATATTTAATTACAGGGAGGTCAAGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATCTAGTGAAAGATTTACATATTTAATTACAGGGAGGTCAAGTG  633

seq1  TTTCTACTGAGATTCAATCTAAACCGGAGCATATAGTCAAATTCTAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGAGATTCAATCTAAACCGGAGCATATAGTCAAATTCTAAAAA  683

seq1  TATTAAGCTTAAAGGACTCCTGAAAAGAAAACAATCTCATATGATGGAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCTTAAAGGACTCCTGAAAAGAAAACAATCTCATATGATGGAGT  733

seq1  TCTAGTAAGTGTAGAAGAATTTTAATCCAGCAACATGGCTGCTCTGGCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAGTGTAGAAGAATTTTAATCCAGCAACATGGCTGCTCTGGCAA  783

seq1  GCAATCACATCCAAAGAATTTCTACCTGATCTAGTTGGAATGCAGACGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACATCCAAAGAATTTCTACCTGATCTAGTTGGAATGCAGACGCA  833

seq1  ACCTTAGGACTCATTTCTAATCCCTAACAATGAAAGTAAAGTTGGTTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGGACTCATTTCTAATCCCTAACAATGAAAGTAAAGTTGGTTTGT  883

seq1  AGAAGGAAACATCCATGTTTGAAAGTGTTGTCTCATTGAGGGGCAGAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAACATCCATGTTTGAAAGTGTTGTCTCATTGAGGGGCAGAGAA  933

seq1  AGACTTGACAGAATGAGTCAGAGATGGGATATGCCCAAATCAAGAACAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGACAGAATGAGTCAGAGATGGGATATGCCCAAATCAAGAACAAT  983

seq1  AGGACAGAAAAACAGAC  1014
      |||||||||||||||||
seq2  AGGACAGAAAAACAGAC  1000