BAC Information

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BAC

Clone NameB6Ng01-013J24
Chromosome12 (Build37)
Map Location 66,135,997 - 66,295,919
singlet/doubletdoublet
Overlap genePrpf39, Fkbp3, Fancm, C79407
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik
Downstream geneWdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J24.bB6Ng01-013J24.g
ACCDH848394DH848395
length1,0231,115
definitionDH848394|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J24, 5' end.DH848395|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,135,997 - 66,137,003)(66,294,804 - 66,295,919)
sequence
gaattcttgagcagtgaattaggagtttgggaaggtaaaacagtgagaga
gttgatgtgattgttaaagactgccctgaccataggaatgcaagcatttg
gttcacatacatacatacatacacaggcagacacatgcataaaaataaat
acatctttaaaaaaacaatgccctctcttgactgccctttcagatggtat
acgtttaaaagttgctgggtttttgttgttgttgttttgtttgtttgttt
ttcaagacagtgtttctctgtgatccttggctgtcctggaactcactttg
tagaccaggctggcctcggactcagaaatctgcctgcctctgtctctgga
gtgctgggattaaaggtgttcgccaccacgcctggcaagttgctgattgt
tagagaatacaaaactgcccaattaagaggtaaagggaaaagcgtgacta
tttcatgcccaacggggaggagttggctatttgggagcagagaagcagtt
gaagaggtttatacaccgttacaaatcatcttaagggcttgagagagggc
tccgcggttaaaagcactgactgctcttccaaaggtcttgagttcaaatc
caagcaaccatatggtggctcacaaccatccctaatgacacctgacactc
tcttctggtgcgtctgaagacagctacagtgtacttagatataataataa
atcttttaaaaaatcatcttaaaaagaaacattctggagaccagttttag
agggaagagtaaaagcccagttgtgagttctctgaaattccaatggaaga
tcgggtgagtgagaaaacattcgctcgctcaattgctctttagtttttac
tgacggaggacgagatttttttttaacaaacggaatatttagagtggggg
actaggaaataaactactgaagagggctgcttaagatcatcaccaccaag
ctgccttctcttggccctgaaagttttatgcctcaatccttccgagcctt
tacctctcaagctctaattggct
gaattctttgaaacatgagctcagtacagactctgttacatgcaaacatg
tgcagcaaacagctcaataggtagaattcacacacaggttccagagagcc
atggaggccaatagagatacagaattcacattgtttcctgctttctatat
gctttagaaaattttacagcctacatatctgtaaaggtaaattaatcttg
aacttaggatatggttgtgtggctcaattggctttcttctgaatgagtgg
atttaaaacaatgaacatacgcagtactgtgattccatgcacggataatc
tttatgtcaacagaaatactgttttctttacaataaaatggtgactagat
gggcttatctagtggaaactggtcctagcaaccacagccccagacatcaa
agtggcatcacctcaggacacgtaaaatcaggacaaagtctgagcttctc
ggttgtaggttgatgtttttggcatgcacaagcacctaagatcatgctca
gaattcatttcagaatgagcaattttattaccattcttacaacaccccca
tgcccctgattctcccctagaatctacagccctgactcagtgacaacaag
gtgactcacaagctgcagctttatttttagtgcacggcataatcccgaga
cagagccacagatgtttagagacaaaaaaagaagaagaaaaacaaaactg
gtaacacagaaataatagttctttggactttaaagagactgtctctttct
ttctgaatcttaatgcatgtcatcaaggcatggggcacactctggagaag
ctatgttctctcagcactttttctgatgccctttgaagtgtgacaaaaag
caccaaatgcaaaggaaaaatgctgcatccatcacattggtggagccgga
tagcagtcgaccaccacaggctgtgttgtgagactgattcacagggagaa
aagggaactgcaggtggccgcttttccagctcaacaggctttttcttttc
ttcttcttctaaatcagagatgaaattgtactccagttcatgctgaccat
taacatgtcaaagtgaatttcaattatcctgtccagataatggcccattt
gggatgaatagatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66135997_66137003
seq2: B6Ng01-013J24.b_47_1058

seq1  GAATTCTTGAGCAGTGAATTAGGAGTTTGGGAAGGTAAAACAGTGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGCAGTGAATTAGGAGTTTGGGAAGGTAAAACAGTGAGAGA  50

seq1  GTTGATGTGATTGTTAAAGACTGCCCTGACCATAGGAATGCAAGCATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTGATTGTTAAAGACTGCCCTGACCATAGGAATGCAAGCATTTG  100

seq1  GTTCACATACATACATACATACACAGGCAGACACATGCATAAAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATACATACATACATACACAGGCAGACACATGCATAAAAATAAAT  150

seq1  ACATCTTTAAAAAAACAATGCCCTCTCTTGACTGCCCTTTCAGATGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTAAAAAAACAATGCCCTCTCTTGACTGCCCTTTCAGATGGTAT  200

seq1  ACGTTTAAAAGTTGCTGGGTTTTTGTTGTTGTTGTTTTGTTTGTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTAAAAGTTGCTGGGTTTTTGTTGTTGTTGTTTTGTTTGTTTGTTT  250

seq1  TTCAAGACAGTGTTTCTCTGTGATCCTTGGCTGTCCTGGAACTCACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAGTGTTTCTCTGTGATCCTTGGCTGTCCTGGAACTCACTTTG  300

seq1  TAGACCAGGCTGGCCTCGGACTCAGAAATCTGCCTGCCTCTGTCTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGGACTCAGAAATCTGCCTGCCTCTGTCTCTGGA  350

seq1  GTGCTGGGATTAAAGGTGTTCGCCACCACGCCTGGCAAGTTGCTGATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGTGTTCGCCACCACGCCTGGCAAGTTGCTGATTGT  400

seq1  TAGAGAATACAAAACTGCCCAATTAAGAGGTAAAGGGAAAAGCGTGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATACAAAACTGCCCAATTAAGAGGTAAAGGGAAAAGCGTGACTA  450

seq1  TTTCATGCCCAACGGGGAGGAGTTGGCTATTTGGGAGCAGAGAAGCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCCCAACGGGGAGGAGTTGGCTATTTGGGAGCAGAGAAGCAGTT  500

seq1  GAAGAGGTTTATACACCGTTACAAATCATCTTAAGGGCTTGAGAGAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTTTATACACCGTTACAAATCATCTTAAGGGCTTGAGAGAGGGC  550

seq1  TCCGCGGTTAAAAGCACTGACTGCTCTTCCAAAGGTCTTGAGTTCAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCGGTTAAAAGCACTGACTGCTCTTCCAAAGGTCTTGAGTTCAAATC  600

seq1  CAAGCAACCATATGGTGGCTCACAACCATCCCTAATGACACCTGACACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACCATATGGTGGCTCACAACCATCCCTAATGACACCTGACACTC  650

seq1  TCTTCTGGTGCGTCTGAAGACAGCTACAGTGTACTTAGATATAATAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTGCGTCTGAAGACAGCTACAGTGTACTTAGATATAATAATAA  700

seq1  ATCTTTTAAAAAATCATCTTAAAAAGAAACATTCTGGAGACCAGTTCTAG  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCTTTTAAAAAATCATCTTAAAAAGAAACATTCTGGAGACCAGTTTTAG  750

seq1  AGGGAAGAGTAAAAGCCCAGTTGTGAGTTCTCTGAAATTCCAAATGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGGAAGAGTAAAAGCCCAGTTGTGAGTTCTCTGAAATTCC-AATGGAAG  799

seq1  ATC-GGTGAGTGAGAAAACATTCGCTCGCTCAATTG-TCTATAG-TTTTA  847
      ||| |||||||||||||||||||||||||||||||| ||| ||| |||||
seq2  ATCGGGTGAGTGAGAAAACATTCGCTCGCTCAATTGCTCTTTAGTTTTTA  849

seq1  CTGACGGAAGACGAGATTTTTTTTTAAAAAACGG-ATATTTAAGAGT-GG  895
      |||||||| |||||||||||||||||| |||||| |||||| ||||| ||
seq2  CTGACGGAGGACGAGATTTTTTTTTAACAAACGGAATATTT-AGAGTGGG  898

seq1  GGACTAGGATATAAACAACTGAAGAGGGCTGC-TAAGATCATCAACACCA  944
      ||||||||| |||||| ||||||||||||||| ||||||||||| |||||
seq2  GGACTAGGAAATAAACTACTGAAGAGGGCTGCTTAAGATCATCACCACCA  948

seq1  AGCTGCC-TCTCTTTGCCCTGAAAGTTTTATGCCCAAATCCTTCAGAGCC  993
      ||||||| |||||| |||||||||||||||||||  |||||||| |||||
seq2  AGCTGCCTTCTCTTGGCCCTGAAAGTTTTATGCCTCAATCCTTCCGAGCC  998

seq1  TTTAACTCTCAAGC  1007
      |||| |||||||||
seq2  TTTACCTCTCAAGC  1012

seq1: chr12_66294804_66295919
seq2: B6Ng01-013J24.g_65_1179 (reverse)

seq1  TAATCTATCTATCCTAAATGGGCAACTACTCGAACAGTGATATTGGAAAT  50
      ||||||||  |||| |||||||| | ||   | |||| |||| | |||||
seq2  TAATCTATTCATCCCAAATGGGCCATTATCTGGACAG-GATAATTGAAAT  49

seq1  CCACTTTTGACATGTTTATGGTTCAGCATG-ACTGGAGTACAATGTCATC  99
       ||| ||||||||||| |||| |||||||| ||||||||||||| |||||
seq2  TCAC-TTTGACATGTTAATGG-TCAGCATGAACTGGAGTACAATTTCATC  97

seq1  TCTGATTTAAGAAGAAAGAAAGAAAAGAAAAAGCTTGTTTGAGCTGGAAA  149
      |||||||| |||||||   ||||||||||||||| || ||||||||||||
seq2  TCTGATTT-AGAAGAA--GAAGAAAAGAAAAAGCCTG-TTGAGCTGGAAA  143

seq1  AGC-GCCACTTGCAGTTCCCTTTTCT-CCTGTGAATCAGTCTCAC-ACAC  196
      ||| ||||| |||||||||||||||| |||||||||||||||||| ||||
seq2  AGCGGCCACCTGCAGTTCCCTTTTCTCCCTGTGAATCAGTCTCACAACAC  193

seq1  AGCCTGT-GTGGTCGACTGCTAACCTGGCT-CACCAATGTGATGGATGCA  244
      ||||||| |||||||||||||| || |||| |||||||||||||||||||
seq2  AGCCTGTGGTGGTCGACTGCTATCC-GGCTCCACCAATGTGATGGATGCA  242

seq1  GCATTTTTCCTTTGCATTT-GTGCCTTTTGTCACACTTCAAAGGGCATCA  293
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  GCATTTTTCCTTTGCATTTGGTGCTTTTTGTCACACTTCAAAGGGCATCA  292

seq1  GAAAAAGTGCTGAGAGAACATAGCTTCTCCAGAGTGTGCCCCATGCCTTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTGCTGAGAGAACATAGCTTCTCCAGAGTGTGCCCCATGCCTTG  342

seq1  ATGACATGCATTAAGATTCAGAAAGAAAGAGACAGTCTCTTTAAAGTCCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGCATTAAGATTCAGAAAGAAAGAGACAGTCTCTTTAAAGTCCA  392

seq1  AAGAACTATTATTTCTGTGTTACCAGTTTTGTTTTTCTTCTTCTTTTTTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTATTATTTCTGTGTTACCAGTTTTGTTTTTCTTCTTCTTTTTTT  442

seq1  GTCTCTAAACATCTGTGGCTCTGTCTCGGGATTATGCCGTGCACTAAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAACATCTGTGGCTCTGTCTCGGGATTATGCCGTGCACTAAAAA  492

seq1  TAAAGCTGCAGCTTGTGAGTCACCTTGTTGTCACTGAGTCAGGGCTGTAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGCAGCTTGTGAGTCACCTTGTTGTCACTGAGTCAGGGCTGTAG  542

seq1  ATTCTAGGGGAGAATCAGGGGCATGGGGGTGTTGTAAGAATGGTAATAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGGGAGAATCAGGGGCATGGGGGTGTTGTAAGAATGGTAATAAA  592

seq1  ATTGCTCATTCTGAAATGAATTCTGAGCATGATCTTAGGTGCTTGTGCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCATTCTGAAATGAATTCTGAGCATGATCTTAGGTGCTTGTGCAT  642

seq1  GCCAAAAACATCAACCTACAACCGAGAAGCTCAGACTTTGTCCTGATTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAACATCAACCTACAACCGAGAAGCTCAGACTTTGTCCTGATTTT  692

seq1  ACGTGTCCTGAGGTGATGCCACTTTGATGTCTGGGGCTGTGGTTGCTAGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTCCTGAGGTGATGCCACTTTGATGTCTGGGGCTGTGGTTGCTAGG  742

seq1  ACCAGTTTCCACTAGATAAGCCCATCTAGTCACCATTTTATTGTAAAGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTCCACTAGATAAGCCCATCTAGTCACCATTTTATTGTAAAGAA  792

seq1  AACAGTATTTCTGTTGACATAAAGATTATCCGTGCATGGAATCACAGTAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTTCTGTTGACATAAAGATTATCCGTGCATGGAATCACAGTAC  842

seq1  TGCGTATGTTCATTGTTTTAAATCCACTCATTCAGAAGAAAGCCAATTGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTATGTTCATTGTTTTAAATCCACTCATTCAGAAGAAAGCCAATTGA  892

seq1  GCCACACAACCATATCCTAAGTTCAAGATTAATTTACCTTTACAGATATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAACCATATCCTAAGTTCAAGATTAATTTACCTTTACAGATATG  942

seq1  TAGGCTGTAAAATTTTCTAAAGCATATAGAAAGCAGGAAACAATGTGAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTAAAATTTTCTAAAGCATATAGAAAGCAGGAAACAATGTGAAT  992

seq1  TCTGTATCTCTATTGGCCTCCATGGCTCTCTGGAACCTGTGTGTGAATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCTCTATTGGCCTCCATGGCTCTCTGGAACCTGTGTGTGAATTC  1042

seq1  TACCTATTGAGCTGTTTGCTGCACATGTTTGCATGTAACAGAGTCTGTAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTGAGCTGTTTGCTGCACATGTTTGCATGTAACAGAGTCTGTAC  1092

seq1  TGAGCTCATGTTTCAAAGAATTC  1116
      |||||||||||||||||||||||
seq2  TGAGCTCATGTTTCAAAGAATTC  1115