BAC Information

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BAC

Clone NameB6Ng01-017G22
Chromosome12 (Build37)
Map Location 116,306,380 - 116,462,816
singlet/doubletdoublet
Overlap geneIgh, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55
Upstream geneEG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506
Downstream geneEG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017G22.bB6Ng01-017G22.g
ACCDH851120DH851121
length1,0441,051
definitionDH851120|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G22, 5' end.DH851121|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,306,380 - 116,307,420)(116,461,763 - 116,462,816)
sequence
gaattcatttttgcttaccatagagagtatgtaacacacaaggccaggtt
cctcagtacacaactctgctgatgagtggtgttgggatgcagtagagttg
agagagacactcactctaacacaaagggcccagactctgttcactcatct
aggaatcacttccctatgattttccatggagggcagatgagattcaaagt
ggagattttactcctaccttgatgacactctgtgtgaatcttaccaatat
atattttttcacaaagttgatacattaattgtatacttcttgcataatgt
aagagtatataccatcccaaggctggtaattgtgaatactataattcctt
gaaaaagagtgatttcattgactttatttatgtgtcaagttcctggctca
catatttgagatttctatctatttaatactcagtagcttcttctttatat
tgacctgtatttgtgataactttaaaatcaacagcagaatgcataaacag
gaagcagggagtttattcaattcactcagttgcagataatcttggaagaa
ggcacagtgggcagaggcttcttgaaggcacagcacacaagcttatagta
ttgttcaacaaccttcagaaatgttaagacacaatgcatacacctttgtt
cttatcagtattgatgtttttagaacttagagagaatgagatttgcctaa
cttttgatcaacattatgcagtgatttgttggcatgaacatgactgaata
taatgaaaaaagcctgtttagctgactaatttcattaaagaagtctacac
caaaagcaatcaagttccctttatgaataaaacatcttcctactttcaga
tgtttgaaagataaaaatatcaaggtatgtccaaaccataaaataggatc
ttagcacaaatttgtgtcacataaggaagagaaaacaattcccagattgc
tgagtgccatctgaggacttgaaccattagtgtaagaatggtgcaatagg
acctgaacacttgcattccttttccagggggtgtcaatgtttaa
gaattctcagtccttaaaaattcctataaagactcttactgggatcaatc
gctaaggtatttgtctccctctgtgagcagaatgtgagcaaatgttatat
aatgttagaaggcctgtgggtcagctctgttgattcacctgaggagatac
atgagaatctggcatgaccgtggaagggggattctgacacagttcctgtc
cctggagcattgctagcccattgattcctatattccccatgtgtacggat
gactgctctttgcctgaaattgacctactcctgactactttactttcgat
ctatctttctggtgaatatacttcccctcattactcagagcaaatcactt
gataataaatgaaacagatgtgcttctcaggaatgaggactggagttggt
tgtgaggctgtggaggacaaggaagaggatttctgcttggcatttaggga
catgggaaaggatctagagaacataaccacaaagccataaaagccaacat
tctcctatgtagaaatagttcattgacttgaatttggaagcatgaggaga
tacatgtaccctcccgtccaatgattgctgtattaatttgccaggatgaa
cttggggatatcaaggatagagagtaaaagtggtctcaagattaaaaggc
atgaatagaataaaaaagaatttataaaatacaagcaaatggcagattta
ttttataggagaaagacttgtatacatctagaaacaaatattatttgaag
gagattagactaggctatggaatctttaggatgaagaaaataaagattag
aaaatttaaaagatgatgtccatgcatacagaaaagctaatagtttgttt
tcctagttacttctaggattcaggatgacaatgactaaatatatactaga
aagtgcttggctgctttacatgcataattatactttgtaaaaattcattc
ctgttcttacatgaaaacagtacaaggattgttgtctgctctaccaggaa
tcatcagagctgtgccaacgtgcaagtgaaaaataagcggtgtaactcct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_116306380_116307420
seq2: B6Ng01-017G22.b_45_1088

seq1  GAATTCATTTTTGCTTACCATAGAGAGTATGTAACACACAAGGCCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTGCTTACCATAGAGAGTATGTAACACACAAGGCCAGGTT  50

seq1  CCTCAGTACACAACTCTGCTGATGAGTGGTGTTGGGATGCAGTAGAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTACACAACTCTGCTGATGAGTGGTGTTGGGATGCAGTAGAGTTG  100

seq1  AGAGAGACACTCACTCTAACACAAAGGGCCCAGACTCTGTTCACTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACACTCACTCTAACACAAAGGGCCCAGACTCTGTTCACTCATCT  150

seq1  AGGAATCACTTCCCTATGATTTTCCATGGAGGGCAGATGAGATTCAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCACTTCCCTATGATTTTCCATGGAGGGCAGATGAGATTCAAAGT  200

seq1  GGAGATTTTACTCCTACCTTGATGACACTCTGTGTGAATCTTACCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTTACTCCTACCTTGATGACACTCTGTGTGAATCTTACCAATAT  250

seq1  ATATTTTTTCACAAAGTTGATACATTAATTGTATACTTCTTGCATAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTCACAAAGTTGATACATTAATTGTATACTTCTTGCATAATGT  300

seq1  AAGAGTATATACCATCCCAAGGCTGGTAATTGTGAATACTATAATTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATATACCATCCCAAGGCTGGTAATTGTGAATACTATAATTCCTT  350

seq1  GAAAAAGAGTGATTTCATTGACTTTATTTATGTGTCAAGTTCCTGGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGTGATTTCATTGACTTTATTTATGTGTCAAGTTCCTGGCTCA  400

seq1  CATATTTGAGATTTCTATCTATTTAATACTCAGTAGCTTCTTCTTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGAGATTTCTATCTATTTAATACTCAGTAGCTTCTTCTTTATAT  450

seq1  TGACCTGTATTTGTGATAACTTTAAAATCAACAGCAGAATACATAAACAG  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGACCTGTATTTGTGATAACTTTAAAATCAACAGCAGAATGCATAAACAG  500

seq1  GAAGCAGGGAGTTTATTCAATTCACTCAGTTGCAGATAATCTTGGAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGAGTTTATTCAATTCACTCAGTTGCAGATAATCTTGGAAGAA  550

seq1  GGCACAGTGGGCAGAGGCTTCTTGAAGGCACAGCACACAAGCTTATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTGGGCAGAGGCTTCTTGAAGGCACAGCACACAAGCTTATAGTA  600

seq1  TTGTTCAACAACCTTCAGAAATGTTAAGACACAATGCATACACCTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAACAACCTTCAGAAATGTTAAGACACAATGCATACACCTTTGTT  650

seq1  CTTATCAGTATTGATG-TTTTAGAACTTAGAGAGAATGAGATTTGCCTAA  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTATCAGTATTGATGTTTTTAGAACTTAGAGAGAATGAGATTTGCCTAA  700

seq1  C-TTTGATCAACATTATGCAGTGATTTGTTGGCATGAACATGACTGAATA  748
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGATCAACATTATGCAGTGATTTGTTGGCATGAACATGACTGAATA  750

seq1  TAATGAAAAAAGCCTGTTTAGCTGACTAATTTCATTAAAGAAGTCTACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAAAGCCTGTTTAGCTGACTAATTTCATTAAAGAAGTCTACAC  800

seq1  CAAAAGCAATCAAGTTCCCTTTATGAATAAAACATCTTCCTACTTTCAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAATCAAGTTCCCTTTATGAATAAAACATCTTCCTACTTTCAGA  850

seq1  TGTTTGAAAGATAAAAATATCAAGGTATGTCCAAACCATAAAATAGGATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAAGATAAAAATATCAAGGTATGTCCAAACCATAAAATAGGATC  900

seq1  TTAGCACAAATTTGTGTCAACATAAGGAAGAGAAAACAA-TCCCAGAATG  947
      |||||||||||||||||| |||||||||||||||||||| ||||||| ||
seq2  TTAGCACAAATTTGTGTC-ACATAAGGAAGAGAAAACAATTCCCAGATTG  949

seq1  CTGAGTGCCATCTGAGGACCTGAACCATTAGTGTAAGA--TGTGCAATAA  995
      ||||||||||||||||||| ||||||||||||||||||   |||||||| 
seq2  CTGAGTGCCATCTGAGGACTTGAACCATTAGTGTAAGAATGGTGCAATAG  999

seq1  GACCTGAACACTTGCATTCCTTTTCCAGGGGGTTGTCAATGTTAAA  1041
      |||||||||||||||||||||||||||||||| |||||||||| ||
seq2  GACCTGAACACTTGCATTCCTTTTCCAGGGGG-TGTCAATGTTTAA  1044

seq1: chr12_116461763_116462816
seq2: B6Ng01-017G22.g_67_1117 (reverse)

seq1  CAGGAGTTACACAGCCTATTCTTCACTGGCAGCTGGGCACAGCTCTTGTG  50
      |||||||||||| || |||| |||||| |||  | |||||||||||  ||
seq2  CAGGAGTTACACCGCTTATTTTTCACTTGCACGTTGGCACAGCTCTGATG  50

seq1  ATTTCCTGGTAGAGCAGACAGCAGTCCTTTGTAACTGTTTTCATGTAAGA  100
      | |||||||||||||||||| || ||| |||| |||||||||||||||||
seq2  A-TTCCTGGTAGAGCAGACAACAATCC-TTGT-ACTGTTTTCATGTAAGA  97

seq1  ACAGGAATGAATTTTTACAAAGTTATAATTTATGCATGTAAAGCAGCC-A  149
      |||||||||||||||||||||| ||||| ||||||||||||||||||| |
seq2  ACAGGAATGAATTTTTACAAAG-TATAA-TTATGCATGTAAAGCAGCCAA  145

seq1  GCACTTTCTAGTATATATTTAGTCATTGTCATCCTGAATCCTAGAAGTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCTAGTATATATTTAGTCATTGTCATCCTGAATCCTAGAAGTAA  195

seq1  CTAGGAAAACAAACTATTAGC-TTTCTGTATGCATGGACATCATCTTTTA  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTAGGAAAACAAACTATTAGCTTTTCTGTATGCATGGACATCATCTTTTA  245

seq1  AATTTTCTAATCTTTAATTTCTTCATCCTAAAGATTCCATAGCCTAGTCT  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATTTTCTAATCTTTATTTTCTTCATCCTAAAGATTCCATAGCCTAGTCT  295

seq1  AATCTCCTTCAAATAATATTTGTTTCTAGATGTATACAAGTCTTTCTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTTCAAATAATATTTGTTTCTAGATGTATACAAGTCTTTCTCCT  345

seq1  ATAAAATAAATCTGCCATTTGCTTGTATTTTATAAATTCTTTTTTATTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAATCTGCCATTTGCTTGTATTTTATAAATTCTTTTTTATTCT  395

seq1  ATTCATGCCTTTTAATCTTGAGACCACTTTTACTCTCTATCCTTGATATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCCTTTTAATCTTGAGACCACTTTTACTCTCTATCCTTGATATC  445

seq1  CCCAAGTTCATCCTGGCAAATTAATACAGCAATCATTGGACGGGAGGGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTCATCCTGGCAAATTAATACAGCAATCATTGGACGGGAGGGTA  495

seq1  CATGTATCTCCTCATGCTTCCAAATTCAAGTCAATGAACTATTTCTACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCTCCTCATGCTTCCAAATTCAAGTCAATGAACTATTTCTACAT  545

seq1  AGGAGAATGTTGGCTTTTATGGCTTTGTGGTTATGTTCTCTAGATCCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGTTGGCTTTTATGGCTTTGTGGTTATGTTCTCTAGATCCTTT  595

seq1  CCCATGTCCCTAAATGCCAAGCAGAAATCCTCTTCCTTGTCCTCCACAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTCCCTAAATGCCAAGCAGAAATCCTCTTCCTTGTCCTCCACAGC  645

seq1  CTCACAACCAACTCCAGTCCTCATTCCTGAGAAGCACATCTGTTTCATTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCAACTCCAGTCCTCATTCCTGAGAAGCACATCTGTTTCATTT  695

seq1  ATTATCAAGTGATTTGCTCTGAGTAATGAGGGGAAGTATATTCACCAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAGTGATTTGCTCTGAGTAATGAGGGGAAGTATATTCACCAGAA  745

seq1  AGATAGATCGAAAGTAAAGTAGTCAGGAGTAGGTCAATTTCAGGCAAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATCGAAAGTAAAGTAGTCAGGAGTAGGTCAATTTCAGGCAAAGA  795

seq1  GCAGTCATCCGTACACATGGGGAATATAGGAATCAATGGGCTAGCAATGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATCCGTACACATGGGGAATATAGGAATCAATGGGCTAGCAATGC  845

seq1  TCCAGGGACAGGAACTGTGTCAGAATCCCCCTTCCACGGTCATGCCAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGACAGGAACTGTGTCAGAATCCCCCTTCCACGGTCATGCCAGAT  895

seq1  TCTCATGTATCTCCTCAGGTGAATCAACAGAGCTGACCCACAGGCCTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTATCTCCTCAGGTGAATCAACAGAGCTGACCCACAGGCCTTCT  945

seq1  AACATTATATAACATTTGCTCACATTCTGCTCACAGAGGGAGACAAATAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATATAACATTTGCTCACATTCTGCTCACAGAGGGAGACAAATAC  995

seq1  CTTAGCGATTGATCCCAGTAAGAGTCTTTATAGGAATTTTTAAGGACTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCGATTGATCCCAGTAAGAGTCTTTATAGGAATTTTTAAGGACTGA  1045

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1051