BAC Information

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BAC

Clone NameB6Ng01-018F20
Chromosome1 (Build37)12 (Build37)
Map Location 5,451,661 - 5,452,17732,869,436 - 32,869,662
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
Downstream geneOprk1, Npbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018F20.bB6Ng01-018F20.g
ACCDH851788DH851789
length1,0071,078
definitionDH851788|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F20, 5' end.DH851789|Mus musculus domesticus DNA, BAC clone: B6Ng01-018F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,451,661 - 5,452,177)(32,869,436 - 32,869,662)
sequence
gaattctttgtgtttccttaaacatttctctaaagtatctgtatgagaat
tagtcaacaaaaaaccatccatgtaatgatgaatgattaaggaaattgcc
tacaagttatttctagcagttgttgcacaaaatattggcatagagttgga
ctatttaacatttcctatggaacaacttttagtgatatctttttattggt
ccaccattattatataggtactatgaaagcaaatctatccctatcctgct
cacgcaaggggattgtgggaaaaaaaaacccaatttttaaagtcaattac
taatgaaagacccacagcgtaaggactgccccacgttctgactcaggaga
ggtgacaccccaaaatcacccacaagaaacggtcttgctgcaacctgcaa
gaggattattattcaagagtgctctcgggcccagggtcatacaccatgca
ggggtagaggaccgcagcgccccagtagctggataagggggtatttaaag
gaaggaaccacaactcaaggaagtgggaagggcattgttggaaaaaaaaa
taccaaagataccagttaagagtcacaaggaagtacaaagtcacaagtgt
cacatggaatacctggtaattgttaactctcaagacagtttctaagagcc
cctaacaatagcacatttgcattgcagattccggtaatggtcagggtgac
tttctttgaatgaacactatttgaacccaggaagcgggtgggtggaggaa
tgtcactatctgttttatgattagcataccttcaaggattgagtctcaaa
ggccacattcccaagcctgacctaaaggcctagaattttgtttttacgtt
ttactttttcattccccacttctacttgttagtagttctaatctttcact
atcacaagccacgacttagtaataaagaaggcaagggattccaggctgga
ccaggcctattgcttgaattactctagtcagcactctctttttctattta
atttttt
gaattctcacccgaggaatactgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcaccagggaaatgcaaatcaaaacagccctgagat
tccatcttacaccagccagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagagcaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcattctggcggttcttct
gaaaattggacatagtactaccataggaacccgcaatacctctcctgggc
atatatccagaagatgtcccagccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaatgaatgaatttaagaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattaacccagaaac
ttagtatagggagatataaggtacaatatgtaaaacatatgaaactgaag
aagaacgaagaccaaagtgtggacactttgctcattcttagtattggaaa
caatcacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatatccagggatccatcccataatta
gcctccaaacgatgacactattgcatacactagcaagcgtttgttgtaag
gaccgtgatatagctgtctcttgtgagactaggccggggcctagcaaaca
cagaagtggatgctcacagtcactattggatggatcacagggccccaatg
gaggagctagagaaagtgtccaggagctaagaatccgcaccctttagtgc
aacattatgaactaaccagtacccgagctctttgactctgctgcatattg
tatcaaagatggcctatttggccatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_5451661_5452177
seq2: B6Ng01-018F20.b_537_1051

seq1  ATTTAAAGGAAGGAACCACAACTCAAGGAAGTGGGAAGGGCATTGTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGAAGGAACCACAACTCAAGGAAGTGGGAAGGGCATTGTTGGA  50

seq1  AAAAAAAATACCAAAGATACCAGTTAAGAGTCACAAGGAAGTACAAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATACCAAAGATACCAGTTAAGAGTCACAAGGAAGTACAAAGTC  100

seq1  ACAAGTGTCACATGGAATACCTGGTAATTGTTAACTCTCAAGACAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTCACATGGAATACCTGGTAATTGTTAACTCTCAAGACAGTTTC  150

seq1  TAAGAGCCCCTAACAATAGCACATTTGCATTGCAGATTCCGGTAATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCCCCTAACAATAGCACATTTGCATTGCAGATTCCGGTAATGGTC  200

seq1  AGGGTGACTTTCTTTGAATGAACACTATTTGAACCCAGGAAGCGGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACTTTCTTTGAATGAACACTATTTGAACCCAGGAAGCGGGTGGG  250

seq1  TGGAGGAATGTCACTATCTGTTTTATGATTAGCATACCTTCAAGGATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAATGTCACTATCTGTTTTATGATTAGCATACCTTCAAGGATTGA  300

seq1  GTCTCAAAGGCCACATTCCCAAGCCTGACCTAAAGGCCTAGAATTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAGGCCACATTCCCAAGCCTGACCTAAAGGCCTAGAATTTTGTT  350

seq1  TTTACGTTTTACTTTTTCATTCCCCACTTCTACTTGTTAGTAGTTCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTTTTACTTTTTCATTCCCCACTTCTACTTGTTAGTAGTTCTAAT  400

seq1  CTTTCACTATCACAAGCCACGACTTAGGTAATAAAGAAGGCAAAGGAATC  450
      |||||||||||||||||||||||||| |||||||||||||| |||| || 
seq2  CTTTCACTATCACAAGCCACGACTTA-GTAATAAAGAAGGC-AAGGGATT  448

seq1  CCAGGCTGGACCAGGCCTATTGCTTGAATTACTCTAGTCAGCACTCTTCT  500
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  CCAGGCTGGACCAGGCCTATTGCTTGAATTACTCTAGTCAGCACTCTCTT  498

seq1  TTTCTATTTAATTTTTT  517
      |||||||||||||||||
seq2  TTTCTATTTAATTTTTT  515

seq1: chr12_32869436_32869662
seq2: B6Ng01-018F20.g_930_1142

seq1  TGTCTCTTGTGAGATTATGCTGGGGCCTGGCAAACACAGAAGTGGATGCT  50
      |||||||||||||| || || ||||||| |||||||||||||||||||||
seq2  TGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACACAGAAGTGGATGCT  50

seq1  CACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAG  100
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CACAGTCA-CTATTGGATGGATCACAGGG-CCCCAATGGAGGAGCTAGAG  98

seq1  ACAGTAATCTAGGAGCTAAAGGGATCAGCAACCCTATAGGTAGAACAACA  150
      | |||  || |||||||||  | ||| ||| || |     |||  |||||
seq2  AAAGT-GTCCAGGAGCTAA--GAATCCGCACCCTT-----TAGTGCAACA  140

seq1  ATATGAACTAACCAGTACCCTCTGGAGCTC-GTGTCTCTAGCTGCATA-T  198
       |||||||||||||||||||    ||||||  || |||| |||||||| |
seq2  TTATGAACTAACCAGTACCC----GAGCTCTTTGACTCT-GCTGCATATT  185

seq1  ATATCAGAAGATGGCCTAGTTGGCCATCA  227
       ||||| ||||||||||| ||||||||||
seq2  GTATCA-AAGATGGCCTATTTGGCCATCA  213