BAC Information

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BAC

Clone NameB6Ng01-018P04
Chromosome12 (Build37)
Map Location 19,459,515 - 19,607,385
singlet/doubletdoublet
Overlap geneEG627871, LOC100042698, LOC629055
Upstream gene5730507C01Rik, EG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848
Downstream geneEG668588, LOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018P04.bB6Ng01-018P04.g
ACCDH852198DH852199
length1,1811,094
definitionDH852198|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P04, 5' end.DH852199|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,606,202 - 19,607,385)(19,459,515 - 19,460,621)
sequence
gaattcactctatagaacaggctggcctctaactcagaaatgcacctgcc
tctgcctcccaattgttgggattaaaggcatgtgccaccactgcctggcc
agatagttgtaagccaccatgtgtgtgctaggaactgaaccccattcctc
tggaggagcaacaagtgcttttaactgccaagtcatcatttctccacacc
accactatttttaaaacacactcacacacatgcacacacatgtacaagtg
cacacatacacatgcacacacacacatgcacaagtgcacacatacacatg
cacacatacacacacattttaaagtttttgtcattattgtatgtggatgt
ttgctttcatgtatgtctgagcaccacatgcatgcagtgctctcagagac
cagagagggcatcacatcccctggaactggaatgacagatgattgtaaac
ttctgtgctgggtgttgaacctgctctcaacctctgaatcatcccacctt
taaaaggtgttcttccactgagctatgccctagatgttctcatgtctaca
ccacgagtctttgctctagtgttcatgatcccattatccatgttttgtgt
ttgtttctgcaaagaaagaaaataccttaggaagctcatccttgggccca
gacgattgtgtttgttcttattttttgagacagggtcaactttgtagcct
ggatagcctggaattttcttgtagaccaggctggcctcaaactcacagag
atttgcctgcctatacattcctgagttctgggattaaaagtaagtgccac
catgcccagtttaggcctcaacatttgaaaatgtgtgttttctgggtcac
cttatggctgactttagaaaatgaatgaaaagcacatctatcctcagctt
atttaacagaacagcacacaaagactgtttattttgtcattttaataaag
tctgtagactctctgtgcttgaaataacgtagtcagtcctagataaagga
gccttaaactaaggtctggggcagctagtcaagttgacttctgctactca
gtcaggaaagctgggtttgggaacttgtgtgtggtggtagaaataagtac
atgctggataatcccgtgcatttcctctccgatccaagtcggcagctgaa
attgctccatgagtgtatttacacaaaaatg
gaattctcccaacataaaaaccttcatttttcaatgagaaaactgaagct
gggagccaagtggtttattcaagagccattggtttatgagaatgggagtg
gagaccatgggatactagaagacaggagcgttgttctgagaagagggagc
ccacagcaatcactctagattgcaccccactagaaacgcacaaagttcat
tgtgtagataggtcagcttggagatgcaaactctgttggagttatcagat
tggaaagcaggaataaactgtgactgtcatggtgaaagaaaattaaaatt
caaggtccatgactcatgcggcttgctagttaggagggctttttgggctt
agagcaaagaacaaaggctgtaaagtcatcccaggaaccaactagccata
aagatagggaaggcataaaagaatgtcctgactggcctggcgcctcccta
tctccctcccttctgacctgggttaaatgttagccagatgctctgctgac
ttagataagcacccggctctcagaattcctgacgccctgacctgcacata
ctctttttctgtagtgtaatcattctgctgaagtttaaatgaaccaatcg
tgtaaacccgctcaaattcctccccccagccccagacccttttctttaaa
aacccctagctttcgagtctcgtggccaacaactgctgtcacctgtgtga
gatacctgtttgcccagagcacccacattaaactacctcatgtgtttgca
tcaagacggtctctcatgattccttcggtgcacgctgaatggggaattca
gtgagggtttccccattaggctctttcagtggcaagaccaagttgttcta
aagacacacttgtgccctcccttcagttttctgaggactgtgacatggac
cccaaggaactggaatttcaccaggatttcaagctgaaattgggaaagtg
ctgggatcctgacactagccagagcaggagtctgtctcagtgctgccagc
ctgcaggaaagatatgggaagggttgtgtgctgagacagaacatgattgt
cgacatgggctgaatctgaccttgctgcgaacctaaaccatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_19606202_19607385
seq2: B6Ng01-018P04.b_43_1223 (reverse)

seq1  CATTTTTCTGGTGTAAATACACCTACGAAGCAATTTCAAGCTGCCAGACT  50
      |||||||   ||||||||||||  | | ||||||||| ||||||| ||||
seq2  CATTTTT---GTGTAAATACACTCATGGAGCAATTTC-AGCTGCC-GACT  45

seq1  ATGGAACTGGAAAGAGATGCACAGTGATATACCACCATGTAC-TATTTCT  99
       |||| | |  | || |||||| | |||   ||| ||||||| |||||||
seq2  -TGGATCGGAGAGGAAATGCAC-GGGATTATCCAGCATGTACTTATTTCT  93

seq1  ACCA-CACACACAAGTTCCCAAACCCAGCTTTCCTGACTGGGTAGCAGAG  148
      |||| ||||||||||||||||||||||||||||||||||| |||||||| 
seq2  ACCACCACACACAAGTTCCCAAACCCAGCTTTCCTGACTGAGTAGCAGAA  143

seq1  CTC-ACCTGACTAGCTGCCACAGACCCTAGTTTAAGGCTCCTTTATCTAG  197
       || || |||||||||||| |||||| |||||||||||||||||||||||
seq2  GTCAACTTGACTAGCTGCCCCAGACCTTAGTTTAAGGCTCCTTTATCTAG  193

seq1  GACTGACTACGTTATTTC-AGCACAGAGAGTCTACAGACTTTATTAAAAT  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GACTGACTACGTTATTTCAAGCACAGAGAGTCTACAGACTTTATTAAAAT  243

seq1  GACAAAATAAACAGTCTTTGTGTGCTGTTCTGTTAAATAAGCTGAGGATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATAAACAGTCTTTGTGTGCTGTTCTGTTAAATAAGCTGAGGATA  293

seq1  GATGTGCTTGTCATTCATTTTCTAAAGTCAGCCATAAGGTGACCCAGAAA  346
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCTTTTCATTCATTTTCTAAAGTCAGCCATAAGGTGACCCAGAAA  343

seq1  ACACACATTTTCAAATGTTGAGGCCTAAACTGGGCATGGTGGCACTTACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTTTCAAATGTTGAGGCCTAAACTGGGCATGGTGGCACTTACT  393

seq1  TTTAATCCCAGAACTCAGGAATGTATAGGCAGGCAAATCTCTGTGAGTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGAACTCAGGAATGTATAGGCAGGCAAATCTCTGTGAGTTT  443

seq1  GAGGCCAGCCTGGTCTACAAGAAAATTCCAGGCTATCCAGGCTACAAAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCTGGTCTACAAGAAAATTCCAGGCTATCCAGGCTACAAAGT  493

seq1  TGACCCTGTCTCAAAAAATAAGAACAAACACAATCGTCTGGGCCCAAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGTCTCAAAAAATAAGAACAAACACAATCGTCTGGGCCCAAGGA  543

seq1  TGAGCTTCCTAAGGTATTTTCTTTCTTTGCAGAAACAAACACAAAACATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTCCTAAGGTATTTTCTTTCTTTGCAGAAACAAACACAAAACATG  593

seq1  GATAATGGGATCATGAACACTAGAGCAAAGACTCGTGGTGTAGACATGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGGATCATGAACACTAGAGCAAAGACTCGTGGTGTAGACATGAG  643

seq1  AACATCTAGGGCATAGCTCAGTGGAAGAACACCTTTTAAAGGTGGGATGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAGGGCATAGCTCAGTGGAAGAACACCTTTTAAAGGTGGGATGA  693

seq1  TTCAGAGGTTGAGAGCAGGTTCAACACCCAGCACAGAAGTTTACAATCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGTTGAGAGCAGGTTCAACACCCAGCACAGAAGTTTACAATCAT  743

seq1  CTGTCATTCCAGTTCCAGGGGATGTGATGCCCTCTCTGGTCTCTGAGAGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTCCAGTTCCAGGGGATGTGATGCCCTCTCTGGTCTCTGAGAGC  793

seq1  ACTGCATGCATGTGGTGCTCAGACATACATGAAAGCAAACATCCACATAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGCATGTGGTGCTCAGACATACATGAAAGCAAACATCCACATAC  843

seq1  AATAATGACAAAAACTTTAAAATGTGTGTGTATGTGTGCATGTGTATGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACAAAAACTTTAAAATGTGTGTGTATGTGTGCATGTGTATGTG  893

seq1  TGCACTTGTGCATGTGTGTGTGTGCATGTGTATGTGTGCACTTGTACATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGTGCATGTGTGTGTGTGCATGTGTATGTGTGCACTTGTACATG  943

seq1  TGTGTGCATGTGTGTGAGTGTGTTTTAAAAATAGTGGTGGTGTGGAGAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGTGTGTGAGTGTGTTTTAAAAATAGTGGTGGTGTGGAGAAA  993

seq1  TGATGACTTGGCAGTTAAAAGCACTTGTTGCTCCTCCAGAGGAATGGGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTTGGCAGTTAAAAGCACTTGTTGCTCCTCCAGAGGAATGGGGT  1043

seq1  TCAGTTCCTAGCACACACATGGTGGCTTACAACTATCTGGCCAGGCAGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTAGCACACACATGGTGGCTTACAACTATCTGGCCAGGCAGTG  1093

seq1  GTGGCACATGCCTTTAATCCCAACAATTGGGAGGCAGAGGCAGGTGCATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACATGCCTTTAATCCCAACAATTGGGAGGCAGAGGCAGGTGCATT  1143

seq1  TCTGAGTTAGAGGCCAGCCTGTTCTATAGAGTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTAGAGGCCAGCCTGTTCTATAGAGTGAATTC  1181

seq1: chr12_19459515_19460621
seq2: B6Ng01-018P04.g_67_1160

seq1  GAATTCTCCCAACATAAAAACCTTCATTTTTCAATGAGAAAACTGAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAACATAAAAACCTTCATTTTTCAATGAGAAAACTGAAGCT  50

seq1  GGGAGCCAAGTGGTTTATTCAAGAGCCATTGGTTTATGAGAATGGGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCAAGTGGTTTATTCAAGAGCCATTGGTTTATGAGAATGGGAGTG  100

seq1  GAGACCATGGGATACTAGAAGACAGGAGCGTTGTTCTGAGAAGAGGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATGGGATACTAGAAGACAGGAGCGTTGTTCTGAGAAGAGGGAGC  150

seq1  CCACAGCAATCACTCTAGATTGCACCCCACTAGAAACGCACAAAGTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAATCACTCTAGATTGCACCCCACTAGAAACGCACAAAGTTCAT  200

seq1  TGTGTAGATAGGTCAGCTTGGAGATGCAAACTCTGTTGGAGTTATCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGATAGGTCAGCTTGGAGATGCAAACTCTGTTGGAGTTATCAGAT  250

seq1  TGGAAAGCAGGAATAAACTGTGACTGTCATGGTGAAAGAAAATTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGCAGGAATAAACTGTGACTGTCATGGTGAAAGAAAATTAAAATT  300

seq1  CAAGGTCCATGACTCATGCGGCTTGCTAGTTAGGAGGGCTTTTTGGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCATGACTCATGCGGCTTGCTAGTTAGGAGGGCTTTTTGGGCTT  350

seq1  AGAGCAAAGAACAAAGGCTGTAAAGTCATCCCAGGAACCAACTAGCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAGAACAAAGGCTGTAAAGTCATCCCAGGAACCAACTAGCCATA  400

seq1  AAGATAGGGAAGGCATAAAAGAATGTCCTGACTGGCCTGGCGCCTCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGGAAGGCATAAAAGAATGTCCTGACTGGCCTGGCGCCTCCCTA  450

seq1  TCTCCCTCCCTTCTGACCTGGGTTAAATGTTAGCCAGATGCTCTGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCCTTCTGACCTGGGTTAAATGTTAGCCAGATGCTCTGCTGAC  500

seq1  TTAGATAAGCACCCGGCTCTCAGAATTCCTGACGCCCTGACCTGCACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAGCACCCGGCTCTCAGAATTCCTGACGCCCTGACCTGCACATA  550

seq1  CTCTTTTTCTGTAGTGTAATCATTCTGCTGAAGTTTAAATGAACCAATCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTGTAGTGTAATCATTCTGCTGAAGTTTAAATGAACCAATCG  600

seq1  TGTAAACCCGCTCAAATTCCTCCCCCCAGCCCCAGACCCTTTTCTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCCGCTCAAATTCCTCCCCCCAGCCCCAGACCCTTTTCTTTAAA  650

seq1  AACCCCTAGCTTTCGAGTCTCGTGGCCAACAACTGCTGTCACCTGTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTAGCTTTCGAGTCTCGTGGCCAACAACTGCTGTCACCTGTGTGA  700

seq1  GATACCTGTTTGCCCAGAGCACCCACATTAAACTACCTCATGTGTTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGTTTGCCCAGAGCACCCACATTAAACTACCTCATGTGTTTGCA  750

seq1  TCAAGACGGTCTCTCATGATTCCTTCGGTGCACGCTGAATGGGGAATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACGGTCTCTCATGATTCCTTCGGTGCACGCTGAATGGGGAATTCA  800

seq1  GTGAGGGTTTCCCCATTAGGCTCTTTCAGTGGCAAGACCAAGGTTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGAGGGTTTCCCCATTAGGCTCTTTCAGTGGCAAGACCAA-GTTGTTCT  849

seq1  AAAGACACACTTGTGCCCTCCCTTCAGTTTTCTGAGGACTGTGACAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGACACACTTGTGCCCTCCCTTCAGTTTTCTGAGGACTGTGAC-ATGG  898

seq1  ACCCCAAGGAACTGGAATTTTCACCAGGAATTTCAAGCTGAAATTGGGAA  950
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  ACCCCAAGGAACTGGAA-TTTCACCAGG-ATTTCAAGCTGAAATTGGGAA  946

seq1  AGTGCTGGGATCCTGACACTAGCCAGAGCAGGAGTCTGTCTCTAGTGCTG  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTGCTGGGATCCTGACACTAGCCAGAGCAGGAGTCTGTCTC-AGTGCTG  995

seq1  CCAGCCTGCAGGACAGATATGGGGAAGGGTTGTGTGCTGAGAAGAGACAA  1050
      ||||||||||||| |||||| |||||||||||||||||||| | |||  |
seq2  CCAGCCTGCAGGAAAGATAT-GGGAAGGGTTGTGTGCTGAG-ACAGAACA  1043

seq1  GGATGGGTCGACCATGGGCTGAATCTTGACCATGACTGCCAAACCTAAAC  1100
       |||  ||||| ||||||||||||| ||||| || ||| | |||||||||
seq2  TGAT-TGTCGA-CATGGGCTGAATC-TGACCTTG-CTG-CGAACCTAAAC  1088

seq1  ACATCTG  1107
       ||||||
seq2  -CATCTG  1094