BAC Information

Click to search

BAC

Clone NameB6Ng01-018P06
Chromosome12 (Build37)
Map Location 56,429,353 - 56,545,625
singlet/doubletdoublet
Overlap gene1110008L16Rik, LOC665366, Psma6, LOC100039871
Upstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, LOC673593
Downstream geneNfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018P06.bB6Ng01-018P06.g
ACCDH852202DH852203
length636907
definitionDH852202|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P06, 5' end.DH852203|Mus musculus domesticus DNA, BAC clone: B6Ng01-018P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,429,353 - 56,429,987)(56,544,718 - 56,545,625)
sequence
gaattctttttggatgttgttaggtagtgtttatctgtgtgtagcgaggc
agtgatgtctatggacagtgccttgagttacagcagttgaaagctgtcat
atgcttgctgttttcctatagttctttatctcttgcctaaaaaatctctg
ctgatggtaaagtaactggtttgttgttgttgttgttgctgtttgttttt
gtttttccagacaaggtttctcagtatagctgtggctgtcctggaactca
ttctgtagaccaggctggcctcgaactcagaaatccacctgcttctgcct
tccaggtgctaggattaaaggtgtgcgccaccacacccggctccattttc
tgtcttcttacaagtaagcttttctaattttaattttgtttaatttgggg
gcagggatgctgggatccaacccagggcctgtatatgtcaggcaagtgct
ctaccactgagctacacctcagaatcggtttatttgagtcagggtctcac
catagccaaggttggcctcaaattaaacacctcccagcttgctggggtcc
catgtatgtgctaccgacacctgactacaaaaatctgggagggtgtttat
ggcatgacattttgctttttttttttccttatctta
gaattcatacacaacgttaataaagtcaaaaacagggccaaggagatggc
acagatctagcatggggatctgtgttcagtttccaaggcctacatagtat
aaagggaaccagctcctgcaagttgtctttgaccttagacagtgctctgt
gtctctgtctctctccctttctatgtctctccttgtctctctctgtctct
ctctctctgtctgtcacacacacacacacacactgactgatgtacttcct
tttgatccccacacctgcctctgtttccttcaatgtagtctatgccaggt
gggtctcccccacaccagccagcaagtttaaattcatcagatctccaccc
cctttttgtttttaatgaatccaccaggacatagagttgatgcatgcctc
cctctcatgatgcatccctcccgtctgtctcaggtcatgtccatccatca
tgtatgtagatgatcactgccttcttcccgtcagcgctcaaagcacccgc
tggcctctccacccctgacagctgcatattggagcaggtgtagaaggaag
ctggttctgctttagctttgtagtctggagtagttcaaggatgtttttct
cctggacacggtctggagtgggttttccgctaaccttcagaagtgagtgc
agtgaagttcagccacaccctcagtagatccagcactccatacttcagcg
tgcatccccctccctgagactctgcaactcactgttgtcttgtttgtttt
cccatccctcggtccattagaatgtggcaactggttgtatttgcttcttt
acttggtcttcagggacattgttgagtgggaggtgtctagagggatttgt
attagaactttttcttttagatgtgtgtgtgtgtgagagaaagagagaga
gagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56429353_56429987
seq2: B6Ng01-018P06.b_46_681

seq1  GAATTCTTTTTGGATGTTGTTAGGTAGTGTTTATCTGTGTGTAGCGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGGATGTTGTTAGGTAGTGTTTATCTGTGTGTAGCGAGGC  50

seq1  AGTGATGTCTATGGACAGTGCCTTGAGTTACAGCAGTTGAAAGCTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTCTATGGACAGTGCCTTGAGTTACAGCAGTTGAAAGCTGTCAT  100

seq1  ATGCTTGCTGTTTTCCTATAGTTCTTTATCTCTTGCCTAAAAAATCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGCTGTTTTCCTATAGTTCTTTATCTCTTGCCTAAAAAATCTCTG  150

seq1  CTGATGGTAAAGTAACTGGTTTGTTGTTGTTGTTGTTGCTGTTTGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTAAAGTAACTGGTTTGTTGTTGTTGTTGTTGCTGTTTGTTTTT  200

seq1  GTTTTTCCAGACAAGGTTTCTCAGTATAGCTGTGGCTGTCCTGGAACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCAGACAAGGTTTCTCAGTATAGCTGTGGCTGTCCTGGAACTCA  250

seq1  TTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCTTCTGCCT  300

seq1  TCCAGGTGCTAGGATTAAAGGTGTGCGCCACCACACCCGGCTCCATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGCTAGGATTAAAGGTGTGCGCCACCACACCCGGCTCCATTTTC  350

seq1  TGTCTTCTTACAAGTAAGCTTTTCTAATTTTAATTTTGTTTAATTTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTACAAGTAAGCTTTTCTAATTTTAATTTTGTTTAATTTGGGG  400

seq1  GCAGGGATGCTGGGATCCAACCCAGGGCCTGTATATGTCAGGCAAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGCTGGGATCCAACCCAGGGCCTGTATATGTCAGGCAAGTGCT  450

seq1  CTACCACTGAGCTACACCTCAGAATCGGTTTATTTGAGTCAGGGTCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTGAGCTACACCTCAGAATCGGTTTATTTGAGTCAGGGTCTCAC  500

seq1  CATAGCCAAGGTTGGCCTCAAATTAAACACCTCCCAGCTTGCTGGGGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCAAGGTTGGCCTCAAATTAAACACCTCCCAGCTTGCTGGGGTCC  550

seq1  CATGTATGTGCTACCGACACCTGACTACAAAAATCTGGGAGGGTGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGCTACCGACACCTGACTACAAAAATCTGGGAGGGTGTTTAT  600

seq1  GGCAGGACATTTTGC-TTTTTTTTTTCCTTATCTTA  635
      |||| |||||||||| ||||||||||||||||||||
seq2  GGCATGACATTTTGCTTTTTTTTTTTCCTTATCTTA  636

seq1: chr12_56544718_56545625
seq2: B6Ng01-018P06.g_68_974 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCACACACACACACATCTAAAAGAAAAAG  50
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCTCTCTCTTTCTCTCACACACACACACATCTAAAAGAAAAAG  50

seq1  TTCTAATTACAAATCCCTCTAGACACCTCCCACTCAACAATGTCCCTGAA  100
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAA-TACAAATCCCTCTAGACACCTCCCACTCAACAATGTCCCTGAA  99

seq1  GACCAAGTAAAGAAGCAAATACAACCAGTTGCCACATTCTAATGGACCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAAAGAAGCAAATACAACCAGTTGCCACATTCTAATGGACCGA  149

seq1  GGGATGGGAAAACAAACAAGACAACAGTGAGTTGCAGAGTCTCAGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGAAAACAAACAAGACAACAGTGAGTTGCAGAGTCTCAGGGAGG  199

seq1  GGGATGCACGCTGAAGTATGGAGTGCTGGATCTACTGAGGGTGTGGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCACGCTGAAGTATGGAGTGCTGGATCTACTGAGGGTGTGGCTGA  249

seq1  ACTTCACTGCACTCACTTCTGAAGGTTAGCGGAAAACCCACTCCAGACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACTGCACTCACTTCTGAAGGTTAGCGGAAAACCCACTCCAGACCG  299

seq1  TGTCCAGGAGAAAAACATCCTTGAACTACTCCAGACTACAAAGCTAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGAGAAAAACATCCTTGAACTACTCCAGACTACAAAGCTAAAGC  349

seq1  AGAACCAGCTTCCTTCTACACCTGCTCCAATATGCAGCTGTCAGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGCTTCCTTCTACACCTGCTCCAATATGCAGCTGTCAGGGGTGG  399

seq1  AGAGGCCAGCGGGTGCTTTGAGCGCTGACGGGAAGAAGGCAGTGATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAGCGGGTGCTTTGAGCGCTGACGGGAAGAAGGCAGTGATCATC  449

seq1  TACATACATGATGGATGGACATGACCTGAGACAGACGGGAGGGATGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATGATGGATGGACATGACCTGAGACAGACGGGAGGGATGCATC  499

seq1  ATGAGAGGGAGGCATGCATCAACTCTATGTCCTGGTGGATTCATTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGGAGGCATGCATCAACTCTATGTCCTGGTGGATTCATTAAAAA  549

seq1  CAAAAAGGGGGTGGAGATCTGATGAATTTAAACTTGCTGGCTGGTGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGGGGTGGAGATCTGATGAATTTAAACTTGCTGGCTGGTGTGGG  599

seq1  GGAGACCCACCTGGCATAGACTACATTGAAGGAAACAGAGGCAGGTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCACCTGGCATAGACTACATTGAAGGAAACAGAGGCAGGTGTGG  649

seq1  GGATCAAAAGGAAGTACATCAGTCAGTGTGTGTGTGTGTGTGTGACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAAGGAAGTACATCAGTCAGTGTGTGTGTGTGTGTGTGACAGAC  699

seq1  AGAGAGAGAGAGACAGAGAGAGACAAGGAGAGACATAGAAAGGGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGACAGAGAGAGACAAGGAGAGACATAGAAAGGGAGAGAG  749

seq1  ACAGAGACACAGAGCACTGTCTAAGGTCAAAGACAACTTGCAGGAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACAGAGCACTGTCTAAGGTCAAAGACAACTTGCAGGAGCTGG  799

seq1  TTCCCTTTATACTATGTAGGCCTTGGAAACTGAACACAGATCCCCATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTATACTATGTAGGCCTTGGAAACTGAACACAGATCCCCATGCT  849

seq1  AGATCTGTGCCATCTCCTTGGCCCTGTTTTTGACTTTATTAACGTTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGTGCCATCTCCTTGGCCCTGTTTTTGACTTTATTAACGTTGTGT  899

seq1  ATGAATTC  908
      ||||||||
seq2  ATGAATTC  907