BAC Information

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BAC

Clone NameB6Ng01-020L11
Chromosome12 (Build37)
Map Location 11,959,543 - 12,019,618
singlet/doubletdoublet
Overlap genenone
Upstream geneKcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390, LOC628327, LOC627110
Downstream geneLOC100043209, D12Ertd553e, LOC100043215, Mycn, EG668473
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020L11.bB6Ng01-020L11.g
ACCDH853434DH853435
length1,0221,072
definitionDH853434|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L11, 5' end.DH853435|Mus musculus domesticus DNA, BAC clone: B6Ng01-020L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,959,543 - 11,960,570)(12,018,539 - 12,019,618)
sequence
gaattctttgttcaattctgagccccattttttaatggggttatttgatt
ttctggagtccaccctcttcagttctttatatatattgaatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtatcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcgattctcgatcttaaagcacaagccattggtgtt
ctattcaggattttttcccctgtgcccatatcttccaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcgatttgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttttttcactggatagtttttgctcccttgccgcacagtcgtc
tgactactgccagctacccacaacacccgccaagcgatcaaaatcattaa
attcttgaaagatgtcagaatcaacttttacttaaaacagagttaaattt
tttaaaaggttaaaaatgctttcaaaatcattaaattcttgaaagatgtc
agagttatttccacactgtcataattaataaagaacatatgagtcattcg
tttgtttgtttatttgtttgtttggttttgagacagggcttctctgtgta
gctctggctgtcctggaactagctctatagatcaggctgtcatccaactt
agagatctgcctgcccctgcctcttgagtgctgatatggagagcacattt
taatcttaaaaactgcagtttacttcatttggaaattactaccttcaatc
ataacctttctttgtttcttgattatatatttatatcttatgtgttacta
aaatgatacactaaacatttctgtaatgtacagtctttttatttttttat
tttttttattttttttcatttt
gaattcatttcaaagagatgcagcactggcttccagttaggaggctgtgc
ggagatggggttattagatgtgcctgctatgggcctgagatggatatcac
atacccttttcaggtttgaaaatatgttattgtgaaagataagcatcagc
gggagttcgctgaactgctgaatctcaggcacatttgactcctctttgaa
gacagatatcaaagagatattattgagggtgcaaagagttttatatgaca
ctaatatatttcttcattgtctcttactagcattatagaaaagccatagc
tagagcttcagtttactacacccacgggtaatatagacatgagcttctac
actgtgaagaggacagctcttgtcatactggaaacaaatcaagcaatttc
ttcatctgcatagttttctcttagtagactaaggcagatgagtgaagcaa
ggtaaacagaagtaaaaaaaaaggttcatctcagttcccaaaagtgtaat
gattgatgtacctacagcagaggtgtgtgcatcctgatgtacctacagca
gaggtgtgtgcatcctgatgtacctatagcagaggtgtgtgcatcctgat
gtacctacagcagaggtgtgtgcatcctgatgtacctacagcagaggtgt
gtgcatcctgatgtacctacagcagagggtgtgtgcatcctgatgatgta
cctacagcagaggtgtgtgcatcctgatgatgtacctacagcagaggtgt
gtgcatcctgatatacctacagcagaggtgtgtgcatcctgatgtaccta
cagcagaggtgtgtgcatcctgatgatgtacctacagcagacgagtgtgc
atcctgatgtacctacagcagagtgtgtgcatcctgatgtacctacagca
gagtgtgtgcatcctgatgatgtacctacagcagagtgtgtgcgtctgat
gtacctacagcagagtgtgtgcgtcctgatgatgtactacagcagagttg
tgcatcctgatgatgtacctacagcaaagggtggtgcatctgatgatgta
ctacaggcagaggtgtgggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11959543_11960570
seq2: B6Ng01-020L11.b_45_1066

seq1  GAATTCTTTGTTCAATTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAATTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACCCTCTTCAGTTCTTTATATATATTGAATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCCTCTTCAGTTCTTTATATATATTGAATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACAGTATCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACAGTATCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA  200

seq1  TGAGGTCCCATTTGTCGATTCTCGATCTTAAAGCACAAGCCATTGGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTGTCGATTCTCGATCTTAAAGCACAAGCCATTGGTGTT  250

seq1  CTATTCAGGATTTTTTCCCCTGTGCCCATATCTTCCAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGATTTTTTCCCCTGTGCCCATATCTTCCAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350

seq1  TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTTGC  400

seq1  ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAAT  450

seq1  GCTGTCTTTTTTTCACTGGATAGTTTTTGCTCCCTTGCCGCACAGTCGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTTTTTTCACTGGATAGTTTTTGCTCCCTTGCCGCACAGTCGTC  500

seq1  TGACTACTGCCAGCTACCCACAACACCCGCCAAGCGATCAAAATCATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACTGCCAGCTACCCACAACACCCGCCAAGCGATCAAAATCATTAA  550

seq1  ATTCTTGAAAGATGTCAGAATCAACTTTTACTTAAAACAGAGTTAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGAAAGATGTCAGAATCAACTTTTACTTAAAACAGAGTTAAATTT  600

seq1  TTTAAAAGGTTAAAAATGCTTTCAAAATCATTAAATTCTTGAAAGATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGTTAAAAATGCTTTCAAAATCATTAAATTCTTGAAAGATGTC  650

seq1  AGAGTTATTTCCACACTGTCATAATTAATAAAGAACATATGAGTCATTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATTTCCACACTGTCATAATTAATAAAGAACATATGAGTCATTCG  700

seq1  TTTGTTTGTTTATTTGTTTGTTTGGTTTTGAGACAGGGCTTCTCTGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTATTTGTTTGTTTGGTTTTGAGACAGGGCTTCTCTGTGTA  750

seq1  GCTCTGGCTGTCCTGGAACTAGCTCTATAGATCAGGCTGTCATCCAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCTGTCCTGGAACTAGCTCTATAGATCAGGCTGTCATCCAACTT  800

seq1  AGAGATCTGCCTGCCCCTGCCTCTTGAGTGCTGATATGGAGAGCACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGCCTGCCCCTGCCTCTTGAGTGCTGATATGGAGAGCACATTT  850

seq1  TAATCTTAAAAACTGCAGTTTACTTCATTTGGAAATTACTACCTTCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTAAAAACTGCAGTTTACTTCATTTGGAAATTACTACCTTCAATC  900

seq1  ATAACCTTTCTTTGTTTTCTTGATTTATATATTTAATTATCTTATGTGTT  950
      |||||||||||||| |||||||| |||||||||||  ||||||||||| |
seq2  ATAACCTTTCTTTG-TTTCTTGA-TTATATATTTA--TATCTTATGTG-T  945

seq1  TACTTAAAATGATACACTAAACATTTCCTGTAAATGTACAGGTCTTT---  997
      ||| |||||||||||||||||||||| |||| |||||||| ||||||   
seq2  TAC-TAAAATGATACACTAAACATTT-CTGT-AATGTACA-GTCTTTTTA  991

seq1  TTTTTATTTTTTTTTATTTTTTTTTTATTTT  1028
      ||||| | |||||||  |||||||| |||||
seq2  TTTTTTTATTTTTTTTATTTTTTTTCATTTT  1022

seq1: chr12_12018539_12019618
seq2: B6Ng01-020L11.g_66_1137 (reverse)

seq1  ATGCACACACCTCTG-CTGTAGGTACATCATCAGGATGCACACACCTCTG  49
      |||| |||||||||| ||||| ||||||||||| |||||||   ||| ||
seq2  ATGCCCACACCTCTGCCTGTA-GTACATCATCA-GATGCACCACCCTTTG  48

seq1  CTGTAGGTACATCATCAGGATGCACACACCTCTGCTGTAGGTACATCATC  99
      ||||||||||||||||||||||  |||| |||||||||| ||||||||||
seq2  CTGTAGGTACATCATCAGGATG--CACAACTCTGCTGTA-GTACATCATC  95

seq1  AGGACGCACACACCTCTGCTGTAGGTACATCAGGACGCACACACCTCTGC  149
      |||||||||||| ||||||||||||||||||| |||||||||| ||||||
seq2  AGGACGCACACA-CTCTGCTGTAGGTACATCA-GACGCACACA-CTCTGC  142

seq1  TGTAGGTACATCATCAGGATGCACACACCTCTGCTGTAGGTACATCAGGA  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTAGGTACATCATCAGGATGCACACA-CTCTGCTGTAGGTACATCAGGA  191

seq1  TGCACACACCTCTGCTGTAGGTACATCAGGATGCACACTCGTCTGCTGTA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACA-CTCTGCTGTAGGTACATCAGGATGCACACTCGTCTGCTGTA  240

seq1  GGTACATCATCAGGATGCACACACCTCTGCTGTAGGTACATCAGGATGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATCATCAGGATGCACACACCTCTGCTGTAGGTACATCAGGATGCA  290

seq1  CACACCTCTGCTGTAGGTATATCAGGATGCACACACCTCTGCTGTAGGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCTGCTGTAGGTATATCAGGATGCACACACCTCTGCTGTAGGTA  340

seq1  CATCATCAGGATGCACACACCTCTGCTGTAGGTACATCATCAGGATGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAGGATGCACACACCTCTGCTGTAGGTACATCATCAGGATGCAC  390

seq1  ACA-CCTCTGCTGTAGGTACATCAGGATGCACACACCTCTGCTGTAGGTA  448
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCTGCTGTAGGTACATCAGGATGCACACACCTCTGCTGTAGGTA  440

seq1  CATCAGGATGCACACACCTCTGCTGTAGGTACATCAGGATGCACACACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGATGCACACACCTCTGCTGTAGGTACATCAGGATGCACACACCT  490

seq1  CTGCTATAGGTACATCAGGATGCACACACCTCTGCTGTAGGTACATCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAGGTACATCAGGATGCACACACCTCTGCTGTAGGTACATCAGG  540

seq1  ATGCACACACCTCTGCTGTAGGTACATCAATCATTACACTTTTGGGAACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACACCTCTGCTGTAGGTACATCAATCATTACACTTTTGGGAACT  590

seq1  GAGATGAACCTTTTTTTTTACTTCTGTTTACCTTGCTTCACTCATCTGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAACCTTTTTTTTTACTTCTGTTTACCTTGCTTCACTCATCTGCC  640

seq1  TTAGTCTACTAAGAGAAAACTATGCAGATGAAGAAATTGCTTGATTTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTACTAAGAGAAAACTATGCAGATGAAGAAATTGCTTGATTTGTT  690

seq1  TCCAGTATGACAAGAGCTGTCCTCTTCACAGTGTAGAAGCTCATGTCTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATGACAAGAGCTGTCCTCTTCACAGTGTAGAAGCTCATGTCTAT  740

seq1  ATTACCCGTGGGTGTAGTAAACTGAAGCTCTAGCTATGGCTTTTCTATAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCGTGGGTGTAGTAAACTGAAGCTCTAGCTATGGCTTTTCTATAA  790

seq1  TGCTAGTAAGAGACAATGAAGAAATATATTAGTGTCATATAAAACTCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTAAGAGACAATGAAGAAATATATTAGTGTCATATAAAACTCTTT  840

seq1  GCACCCTCAATAATATCTCTTTGATATCTGTCTTCAAAGAGGAGTCAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTCAATAATATCTCTTTGATATCTGTCTTCAAAGAGGAGTCAAAT  890

seq1  GTGCCTGAGATTCAGCAGTTCAGCGAACTCCCGCTGATGCTTATCTTTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGAGATTCAGCAGTTCAGCGAACTCCCGCTGATGCTTATCTTTCA  940

seq1  CAATAACATATTTTCAAACCTGAAAAGGGTATGTGATATCCATCTCAGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACATATTTTCAAACCTGAAAAGGGTATGTGATATCCATCTCAGGC  990

seq1  CCATAGCAGGCACATCTAATAACCCCATCTCCGCACAGCCTCCTAACTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCAGGCACATCTAATAACCCCATCTCCGCACAGCCTCCTAACTGG  1040

seq1  AAGCCAGTGCTGCATCTCTTTGAAATGAATTC  1080
      ||||||||||||||||||||||||||||||||
seq2  AAGCCAGTGCTGCATCTCTTTGAAATGAATTC  1072